Shewanella sedimentimangrovi: JYB85_07170
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Entry
JYB85_07170 CDS
T07846
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00020
Citrate cycle (TCA cycle)
ssem00190
Oxidative phosphorylation
ssem00650
Butanoate metabolism
ssem00720
Other carbon fixation pathways
ssem01100
Metabolic pathways
ssem01110
Biosynthesis of secondary metabolites
ssem01120
Microbial metabolism in diverse environments
ssem01200
Carbon metabolism
Module
ssem_M00009
Citrate cycle (TCA cycle, Krebs cycle)
ssem_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
ssem_M00149
Succinate dehydrogenase, prokaryotes
ssem_M00982
Methylcitrate cycle
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
JYB85_07170 (sdhA)
00650 Butanoate metabolism
JYB85_07170 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
JYB85_07170 (sdhA)
00720 Other carbon fixation pathways
JYB85_07170 (sdhA)
Enzymes [BR:
ssem01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
JYB85_07170 (sdhA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
HI0933_like
DAO
GIDA
Pyr_redox_2
FAD_binding_3
Thi4
FAD_oxidored
Motif
Other DBs
NCBI-ProteinID:
QSX38588
LinkDB
All DBs
Position
1692349..1694115
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AA seq
588 aa
AA seq
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MSIPVREFDAVVIGAGGAGMRAALQISKEGKSCALLSKVFPTRSHTVSAQGGITVALGNA
HEDNWEFHMYDTVKGSDFIGDQDAIEYMCQTGPEAIIELEHMGLPFSRFENGKIYQRPFG
GQSRDFGGEQAARTAAAADRTGHALLHCLYQQNVKNKTQVFSEWYALDLVKNEDGAIVGC
TAIDIESGEIVYFKAKATVLATGGAGRIFASTTNAHINTGDGVGMAVRAGVQLQDMEMWQ
FHPTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIREG
RGCDGPMGPHIKLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVIPTCHYMMGGL
PTKVSGQVIRKNEDGSEQDVVGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHLG
KALDETADPKAASNADIQKSLERLNRWESNKDGEDPAQIRKDLQMCMQLNFSVFRSGDAM
AEGLEQLKQIRERLANAKLSDNSKEFNTQRIECLELDNLMATAIASAYAANFRTESRGAH
SREDFPERDDDNWLCHSLFDPVTETMSTREVNMSPKSREAFPPKKRTY
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgagtattccagttcgcgaatttgacgcagtggtgattggtgccggtggtgccggtatg
cgcgctgcgctgcagatttccaaagaaggcaagagctgtgcgctcctgtccaaagtattc
ccaacccgttctcacactgtgtctgcccagggcggtatcacagtagccctgggcaacgcc
cacgaggacaactgggaatttcacatgtacgacactgtcaagggttccgatttcatcggt
gaccaggacgccatcgaatacatgtgtcagaccggtccagaagccattatcgagctggaa
cacatgggtctgcctttctcccgcttcgagaacggcaagatctaccagcgtccattcggt
ggccaatcaagagattttggtggcgaacaggccgcccgtactgcggccgcggccgaccgt
accggccacgcgctgctgcactgcctgtaccaacaaaacgttaagaacaagacccaggtg
ttctctgagtggtatgccctggatctggtgaagaacgaagacggcgccatcgtaggctgt
accgccatcgacatcgaaagcggtgaaatcgtgtacttcaaggccaaggccactgtgctc
gccaccggcggtgccggtcgtatcttcgcctctaccaccaacgcccatatcaacaccggt
gacggcgtgggtatggcagtccgtgcaggcgtacagctgcaggacatggaaatgtggcag
ttccaccccacaggtattgccggtgccggcgtactggtgaccgaaggttgccgcggtgag
ggcggatacctgctgaacaaggacggcgagcgtttcatggagcgttatgcgcccaacgcc
aaagacctggcgtcccgtgacgtggttgcccgttccatgatgaccgaaatccgtgaaggt
cgtggttgtgacggcccaatgggtccgcacatcaagctgaagctggaccacctgggtaaa
gaaaccctggaagcccgtctgccaggcgtgtgtgaactgtcacgtacctttgctcacatc
gatccggccgatggtccaatccctgtgatcccaacctgtcactatatgatgggtggtctg
ccgaccaaggtttccggtcaggttatccgcaagaatgaagacggcagcgagcaggacgta
gtaggtctgtttgccgtgggcgaaatcgcctgcgtatccgtacacggtgccaaccgtctg
ggcggtaactcgttgcttgacctggtggtattcggtcgtgcggccggtcaacatctgggc
aaggccctggatgagactgccgatcctaaggcggcttccaacgccgacatccagaagtct
ctggagcgtctgaatcgttgggaaagcaacaaagacggtgaagacccagcgcaaatccgt
aaagatctgcagatgtgtatgcagctgaacttctcggtattccgcagcggtgacgccatg
gccgaaggcctggaacagctgaagcaaatccgtgagcgtttggccaatgccaagctgtcc
gataactccaaagagttcaacacccagcgcatcgagtgtctggaactggacaacctgatg
gccaccgccatcgcctccgcttatgcagcgaacttccgtaccgagagccgtggtgctcac
agccgtgaagacttccctgagcgtgacgatgacaactggttgtgccacagcctgttcgat
cccgtgaccgaaaccatgtccacccgtgaagtgaacatgtcgcccaagtcacgtgaagcc
ttcccaccgaagaagcgtacctactaa
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