Shewanella sedimentimangrovi: JYB85_07800
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Entry
JYB85_07800 CDS
T07846
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB85_07800 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssem03019
]
JYB85_07800 (rne)
03009 Ribosome biogenesis [BR:
ssem03009
]
JYB85_07800 (rne)
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JYB85_07800 (rne)
Messenger RNA biogenesis [BR:
ssem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYB85_07800 (rne)
Ribosome biogenesis [BR:
ssem03009
]
Prokaryotic type
rRNA processing factors
JYB85_07800 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QSX38697
LinkDB
All DBs
Position
complement(1821872..1825111)
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVISEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMSDLEVPAGMGLIVRTAGVGKESSEL
QWDLKVLLRHWDAIREASETHPAPMLIHQESNVIVRAIRDYLRRDVGEILIDHPRVFEEA
KQHIALVRPDFVERVKLYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHQDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHEVEVYVIPDPHMMTP
DFKVIRHRKDDEIEEASYKRTEKPEAKLYEPRKLERTAAPEPVLKGFGAPVAMEAPVSKP
APVKAKKEEVAKPGFFSRLFSAIGAIFTPAEKQEEVKEKPAKTETRQGANRSRNRRRPGE
EGDKRGGRGEGSRGEGSRDGRRGGRSKQEAQSNREEKPLREREEQPKRERAPKRERVERE
KPVEQVEVAQFDDEPKQEVVRERRQRRNMRRKVRITESQELNEQVQVAAEVGQTAEMGQT
EVKVDAPQEDKPAKPRRQPRKPKSEEQIDDAAEIKATATEATEVVETAEVVEDAVTQVAV
SNEFAAPQGDDVDTDAIDTDSELSDEDKPKREGRDGQRRSRRSPRHLRAAGQRRRRDEQE
ANGELPESDEAVADVATQVEATVVEASDVEASVVEAPVAEANVTESAASAAPVVAEIAAE
TQVVATETPAAEAETAAPAAVEAPVVAASVAETAVVTEAVVATEAPVVSDEAAKQDAVQE
QPAPVAVITEKAEVAKTAADAAKATAASAPMAKPEAIKPVKAHKVPEVKAAPVSNEVKPA
RAVSSRFGSMVSSDMTKPVVENREHVATPKGREYDASDAKATESMVSKANSAGSDMARP
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgtagccctggtagat
gggcaacaactttatgatctggatatcgaaagtcctggtcatgagcagaaaaaagccaac
atttacaagggtaaaatcacccgcgtagaaccctctctcgaagcagccttcgtagactat
ggtgccgagcgccacggtttcctgcccctgaaagaaattgcccgtgaatactttcccaag
ggatactccttccagggtcgccccaatatcaaggaagtgatcagcgaaggtcaggaagtc
atagttcagattgacaaagaagagcgtggcaacaagggcgccgccctgaccacctttatc
agcctggccggttcttacctggtgctgatgcccaacaacccccgcgccggtggtatctcc
cgccgtatcgagggtgatgagcgcaccgaactgaaagaagccatgtcggatctggaagtg
cctgccggcatgggcctcatcgtccgtaccgcaggtgttggcaaggaatcctccgagctg
caatgggatctcaaggtgctgctgcgccactgggacgccatcagggaagcctccgagacc
catcctgcgcccatgctgatccatcaggaaagcaacgtgatagtgcgtgccatccgtgac
tatctgcgccgcgacgtgggcgaaattctcatcgaccacccacgggtattcgaagaggcc
aagcaacatattgctctggtgcgtccggattttgttgagcgggttaagctttacaaggcc
gaagtgccactgttcacccattaccagattgaatcccagattgagtcggccttccagcgc
gaagtacgtctgccttccggcggttcgattgtgatcgaccccacagaggccctgacctct
atcgatatcaactccgcccgtgccacaaaaggcggtgatatcgaagaaacggccctgaac
accaacctggaagcggccgatgaaatcgcccgtcagttgcgtctgcgcgacctgggtggt
ctggtggttatcgacttcatcgacatgaccccggttcgtcatcaacgcgaagtggaaaac
cgcctgcgtgatgcagtgcatcaggatcgcgcccgggtgcaactgggtcgtatctcccgt
tttggtctgatggaaatgtcccgtcagcgcctgcgtccgtcgctggaagaatctgcagcc
catatctgcccacgctgtcatggccagggcactatccgcggcaccgagtcactggccctg
tctatcctgcgtctgatggaagaagaagccatcaaggaaaacacctcgcagatcgaggcc
atagtgcccgtggacgtggctgccttcctgctcaacgaaaagcgtaaggctattcgcatc
acagaacagcgccatgaagtcgaagtgtacgtgatcccggatccgcacatgatgacgcct
gacttcaaggttatccgccaccgtaaggatgacgagatagaagaagccagctacaagcgc
accgaaaagccagaagccaagctgtacgagccgcgcaaactggaacgcaccgcagctcct
gagccggtactgaaaggttttggcgccccagtggctatggaagccccggtcagcaagcct
gctcccgtcaaagccaagaaggaagaagtggccaagcctggattcttcagccgcctgttc
tcagccataggcgccatcttcacccctgccgaaaagcaggaagaagtaaaagagaaaccg
gccaaaaccgaaacccgtcaaggcgccaatcgcagccgtaatcgccgccgtcccggtgaa
gagggtgacaagcgcggtggtcgcggtgaaggcagtcgcggcgaaggtagccgtgacggt
cgccgtggtggccgttccaagcaggaagcccaaagcaaccgcgaagaaaaaccgctgcgt
gagcgtgaagaacagccaaagcgtgaacgtgctcccaagcgtgaacgtgttgagcgcgaa
aagccggttgaacaggtagaagttgcccagtttgacgatgaacctaagcaggaagtcgta
cgtgagcgtcgccagcgtcgcaacatgcgtcgtaaggttcgcatcactgagtcccaggaa
ctgaatgaacaggtccaggtggcggccgaagtgggtcaaaccgccgaaatgggtcaaacc
gaagtcaaagtggatgcaccgcaggaagacaagcctgccaagcctcgccgtcagcctcgc
aagccaaagagcgaagagcagattgatgacgcagccgaaatcaaggcaactgcaacagaa
gcaactgaagtggtcgaaaccgctgaagtagtcgaagacgccgtcacccaggtcgcggta
tcaaacgagttcgctgcgccccaaggcgatgatgttgacaccgatgcgatcgataccgac
tccgagctttccgacgaagacaagccaaagcgtgagggccgcgatggccaacgccgcagc
cgtcgcagtccccgccacctgcgtgccgccggtcagcgccgtcgccgtgatgagcaggaa
gccaacggtgaattgccggaaagcgacgaagctgtcgctgatgtggcaacccaggtcgaa
gccactgttgttgaagcatctgacgttgaagcatctgttgttgaagcgcccgtcgccgaa
gcaaacgtgactgaaagtgccgcttctgccgcgcccgttgttgcagagattgccgctgaa
actcaggttgtggcgacagaaacgccggctgccgaagcagaaaccgcagcccccgcggct
gttgaagcgccagtagtggctgcctcagtagccgaaaccgctgttgtcactgaagctgtc
gttgcaaccgaagctcctgttgtaagtgatgaagcggctaagcaggacgctgttcaggaa
cagcctgctccggtagccgtcatcaccgagaaggctgaagtcgccaaaactgcagccgat
gcagccaaggccactgccgccagcgccccaatggccaaaccggaagcgatcaagccggtg
aaagcccacaaggtgccagaggtcaaggcagcgccggtgagcaacgaagttaaacctgcc
cgcgccgtcagcagccgcttcggctccatggtcagttcagatatgaccaagcctgtggtg
gagaaccgtgagcatgtggcgacccccaagggccgcgagtatgatgcctccgacgccaag
gcgaccgagtccatggtgagcaaggccaacagtgccggctcggacatggctcgaccctga
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