Shewanella sedimentimangrovi: JYB85_08080
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Entry
JYB85_08080 CDS
T07846
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase FadD
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00061
Fatty acid biosynthesis
ssem00071
Fatty acid degradation
ssem01100
Metabolic pathways
ssem01212
Fatty acid metabolism
ssem02024
Quorum sensing
ssem04146
Peroxisome
Module
ssem_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JYB85_08080 (fadD)
00071 Fatty acid degradation
JYB85_08080 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JYB85_08080 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
JYB85_08080 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ssem01004
]
JYB85_08080 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssem04147
]
JYB85_08080 (fadD)
Enzymes [BR:
ssem01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JYB85_08080 (fadD)
Lipid biosynthesis proteins [BR:
ssem01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JYB85_08080 (fadD)
Exosome [BR:
ssem04147
]
Exosomal proteins
Exosomal proteins of breast milk
JYB85_08080 (fadD)
Exosomal proteins of breast cancer cells
JYB85_08080 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
QSX38750
LinkDB
All DBs
Position
1878615..1880291
Genome browser
AA seq
558 aa
AA seq
DB search
MDKPWINHLPHDVPAEINPAQFETLVAMFENAVGRFEDQPAFINMGAVLTYRKLEERSRA
FAAYLQNRLKLKKGDRVAVMMPNLLQYPIALFGILRAGLVVVNVNPLYTPRELKHQLIDS
GARAIVVVSNFARTLEEVVDETPVESVIISGLGDMLSAPKRTLVNFVVKYIKKLVPKYSL
PHAISMRDALSRGRRMQYVKPELEHSDLAFLQYTGGTTGVSKGAMLSHGNIVANVLQADG
AYSPLLTDGKELVVTALPLYHIFALTVNCLLFLHKGARNLLITNPRDIPAFVSELRKYPF
TALTGVNTLFNALVNNSDFASLDFSRLKLSIGGGMAVQRAVAEKWQGITQTRLLEGYGLT
EASPLVTCCPYNLEGYNGSIGFPAPSTLIQIRDEDGKVLPQGETGELFAKGPQVMLGYWQ
RPEESAKVLDKDGWLATGDIGYMDPQGFFFLVDRKKDMILVSGFNVFPNEVEDVVAMHPK
VLEVAAIGVPNEASGELVKIFVVAKDKSLTEQDIIKHCKHHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEELKKA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtggacaaaccttggatcaatcatttgccacatgacgtgccggcggaaatcaatccggcc
cagttcgaaaccttggtcgctatgtttgaaaatgcggttggtcggtttgaagatcaaccg
gcgtttatcaatatgggcgcggtactgacctatcgtaagttggaagagcgcagtcgagcc
tttgccgcttacctgcaaaaccggctcaaactgaaaaagggcgatcgggttgccgtcatg
atgcccaatctgctgcaataccccatagccctgttcggcatactgcgggccggtctggtg
gtggtaaacgtcaatcccctatacaccccgagagaactcaaacatcaactgatagactcg
ggtgcccgtgccatagtggtggtgtccaactttgcccgcaccctggaagaagtggttgat
gaaactccggtggagagcgtgatcatttccggccttggcgacatgctcagtgcccccaag
cgcaccctggtgaactttgtggtcaagtacatcaagaagctggtgcccaagtattcattg
ccacacgcgatttccatgcgcgatgccctgagccgcggccgccgcatgcagtatgtcaag
cccgagcttgagcacagcgatctggcctttttgcaatacacgggcggtaccacaggcgta
tccaagggcgccatgctcagtcacggcaatatagttgccaacgtgttgcaggccgacggc
gcctattcgccgctgctgaccgacggcaaggagctggtggttaccgccttgcccctgtat
cacatctttgctttgaccgtgaactgtctgctgttcctgcacaagggcgccagaaacctg
ctgatcaccaatccaagggatatacccgcctttgtcagtgaattgcgcaaatatccgttc
acggcactgaccggcgtcaacaccctgttcaatgctctggtcaacaacagcgactttgct
tcgctggatttttcccggcttaaattgtccataggtggtggcatggcggtgcaacgtgcc
gtggccgaaaagtggcaggggatcacccagacccgcttgcttgaggggtatggtttgacc
gaagcctcaccactggtgacctgctgtccctataaccttgaaggttataacggctccatt
ggttttccggcgccttccaccctgatccaaattcgtgatgaagacggcaaggtgcttccc
cagggagaaaccggcgagctgttcgccaaggggccccaggtgatgctgggttactggcag
cgtccagaagaaagtgccaaggtgctggataaggacggttggctggccactggcgatatt
ggctatatggacccacagggattctttttcctggtggatcgcaagaaggacatgatcctg
gtatccggcttcaacgttttccccaatgaggtcgaagatgtggtggccatgcatcccaag
gtgctcgaagtggcagccattggtgtgcccaatgaggccagcggcgagttggtgaagatt
tttgtggtcgcgaaagacaaatctttgaccgaacaggacatcatcaagcactgcaagcat
catttaacgggctataaggtgcccaagctggtagaatttcgcgatgagttgccaaaaacc
aatgtgggaaagattctgcgccgggagcttcgggacgaagaactcaaaaaagcatga
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