Shewanella sedimentimangrovi: JYB85_08260
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Entry
JYB85_08260 CDS
T07846
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB85_08260 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_08260 (recC)
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYB85_08260 (recC)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB85_08260 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QSX38783
LinkDB
All DBs
Position
complement(1919456..1922962)
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AA seq
1168 aa
AA seq
DB search
MFRLIHSNQMEVLSSRLADLVRFPAPGSPPLGEEQILVQSPGMATWLRLELAAHNGIAAA
LAFPLPSSFIWSLCHTLLPEVPMDNAFTKEAMTWKLMQLLPGLLDADTQGLYQPLGHYLA
AADTQDKATEQTSQPLKLYQLAGRIADIFDQYLVYRPDWILAWESGEDNPLPDGQSLPQS
ALWQPALWRQLQAFNNEHLRQSRWHRANLHQSLLEALADPNTSLAGLPKRLFVFGISSMA
PQTLEVLHALAGRIDVLMFNLSPCRQYWGDIVDPRQRARLALKYGENKLLPEHWEDSLEV
GNPLLAANGKMGRELLDLILSLPEQHLDTDEALYVEPGQDCLLHLLQQDILEMQILDDEP
LGPDLHLYQQAAKRRPLRPDDSSLCIRSCHSPLREVETLHDHLLALLAADEGLTAKDIVV
MLPDVAAYAPYIDAVFSSRRGDHAIPYAIADRGAREESPLVNSFLTALDLDNSRFGLSDI
LGMLEVPAVMARWRLDEDELARIRQWLRDAGVRWGRDGASRERLALPAFDKHSWAFGVRR
LILGYALGDDSELYLGNLPMSGIEGQQAQALGKLLDFIEMLDEFRLSMAKQARAPERLAL
LAGLLEQLYQDSDDSRDDLQLIRECLGKLSDNLSGSGFDQELPLAVMAQYFRSELGQSRV
GQRFLAGAVNFCTLMPMRSIPFQVVCLLGMNDGLYPRVQHPVGFDLMAQLGPRRGDRSRR
LDDRYLFLEALLSARRQCYISFIGHSERDNSERLPSMLVSELLDCCELSVRPAHLPLPEV
DDDQIASDFADRCSTELRRMLVWRQPLQPFDERLYRADDQSLTPSFSPQWYPQALATAED
RQPFVDIQLTADADEWADALPLAALIRFYRDSSRFYCQRRLKLDLRLDLEQQEDEEPFAL
NALERYQLQLLLMDTALTVDEEQAPEALADLGMRLGASGQLPMAPFDGLLLTDFSRDVAP
AIERCRFLFADAEPDTLTLELILPSGQKLSGRIDRLYPKGMVNFRPGTAKAKDLLALYLR
HLCLCAAGRSAPSFLLDSGHFHSLSPLLPEMALTLLDNLVAHYRHAATVPLAFFPSCSLE
YAQAEGDHETRLAAVAPIWLDEQGGEERGEGTEPHNRRLFRFPDDFSEAGFGQLALNVYT
PLLALFHKDKLAALGDFVRVGPTTGATV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgttcagactcattcattccaaccagatggaagtgctgtcttcgcggcttgcggatctg
gtgcgcttccctgcccccggcagcccgccccttggcgaagagcagatcctggtgcaaagc
ccgggtatggccacctggctcagattggaactggcggcccacaatggcatagcggcggcc
ctggccttccctctgccttcgagtttcatttggtccctgtgccataccctgctgcccgag
gtgcccatggacaacgccttcaccaaggaggccatgacctggaagctgatgcaattactg
ccggggttgttggatgccgacacccagggcttgtatcaacccctcgggcactatttggcc
gcagcggacacgcaggataaggccactgagcagactagccagccgctcaagctgtatcaa
ctggcggggcgcatcgccgacatctttgaccaatatctggtgtaccgcccggactggatc
ctggcctgggaaagtggcgaggataatccgttgcccgatggccagtccctgccgcaaagc
gccctctggcaaccggcgctgtggcgccaattacaggccttcaacaatgagcacctgcgc
caaagtcgctggcacagggccaatctgcatcagagtctgctggaggccctggccgatccc
aatacctccctggccggactgcccaagcggctgtttgtctttggcatctcgtcaatggcg
ccccaaacgttggaggtgctgcacgcccttgccgggcgcatagatgtgctgatgtttaat
ctcagtccctgtcgccaatactggggcgatatagtggacccgcgccagcgggcccgtctg
gcgctgaagtacggtgaaaacaaactcttgcccgagcattgggaagacagtctggaggtg
ggtaacccgctgctggcggccaacggcaaaatgggccgcgagctgctcgatcttatcctc
agcttaccggagcaacacctggatacggatgaagccctttatgtggaaccgggtcaggat
tgcctgttgcacctgctgcaacaggatattctggagatgcaaattctggacgatgaaccg
ctggggccggatctgcacctgtaccagcaggccgccaaacgccggcccttgcgcccggat
gacagctccctttgcatccgcagttgccacagtcccctcagggaagtggaaaccctgcat
gatcatttgctggcactcttagccgccgatgaaggcttaacggccaaggacatagtggtg
atgctgccggatgtcgccgcctacgctccctacatagatgcggtcttttcctcccgccgc
ggcgatcatgccattccctacgccattgccgacaggggcgcccgcgaagaatcccccctg
gtcaacagctttttgaccgccctggacctggataacagccgttttggtttgtcggatatc
cttgggatgctggaagtaccggcggtgatggccaggtggcgtctggatgaggatgaactg
gcacgaattcgccaatggctgcgcgatgccggggtacgctgggggcgcgacggagccagt
cgtgagcgcctggcgctgccggcctttgacaagcattcatgggccttcggggtacgccgc
cttatcctgggctacgcgctgggagatgacagcgagctgtatctgggcaatctgcccatg
tccggcattgaaggccagcaggcacaggcgctcggtaagcttttggactttatcgagatg
ctcgacgaatttcgcctgtccatggccaagcaagccagggcgccagagcgtcttgctctg
ctggccggattgttggagcaactgtaccaggacagcgacgacagccgcgacgatctgcag
ctcatccgtgaatgcctgggtaagctctcggacaacctcagcggcagtggttttgaccag
gagctgccattggcggtcatggcccagtacttccgctctgagctgggtcagtcacgggtg
ggacaaagattcctcgccggcgcggtcaatttctgtaccctgatgccgatgcgctccatt
cccttccaggtggtgtgcctgctcggaatgaacgatggtctgtaccccagggtgcagcat
cccgtgggattcgacctgatggcccaacttggccccagacggggcgaccgctcccgccgt
ttggatgacagatacctgttcctcgaagccctgttgtccgccaggcgccagtgctacatc
agctttatcggtcacagcgagcgcgataacagcgaacgcctgccgtccatgctggtgtcg
gagctgctggattgctgcgaactgagcgtgcgcccggcacatctgccactgcccgaagtc
gatgacgaccaaattgccagcgattttgccgaccgctgcagtaccgaactcaggcgcatg
ctggtgtggcgtcaaccgctgcagccctttgatgagcgcctgtaccgggccgatgaccag
tcgctgacccccagcttttcaccccagtggtatccacaggccttagccacggctgaggac
aggcagccctttgtcgacatccagctcacggcggacgccgatgaatgggccgacgccctg
ccgctcgccgcgctaatacgtttttaccgtgacagcagccgtttctattgccagcggcgc
ctcaagctggatctgcgcctggatctggaacaacaggaagacgaggagccctttgccctt
aacgccctggaacgctaccagttgcagctgctgctgatggacacggcactgaccgtggat
gaagagcaggcccccgaagcgctggcagatcttggcatgcgcctcggcgcctcaggtcaa
ttgccgatggcgccctttgatggtttgctgctgacggatttcagccgcgatgtggcaccg
gccatcgagcgctgccgctttttgttcgccgatgccgaaccggacaccctgaccctggag
ctcattttgccctcgggtcaaaaactcagtggccgaatcgatcgcctctaccccaagggc
atggtcaattttcgtcccggtaccgccaaggccaaggatctgttggcgttgtatttaagg
cacctgtgtctgtgtgctgccggcagaagcgccccctccttcttgttggattccgggcat
ttccacagcctaagcccactgctgccggaaatggcattaacgctgctggataatctggtg
gcccattaccgccatgccgcgacagtgcctctggcctttttccccagctgctccctggaa
tacgcccaggccgagggcgatcatgagacccggcttgcggccgtggcccccatctggctc
gatgagcaagggggggaagagcgcggtgaaggtaccgagccccacaaccggcgactgttc
cgctttcccgatgacttcagcgaagccggtttcggccaactggcgctgaatgtctacacg
ccgctgctggccctgttccacaaggacaagctggccgcgctgggcgatttcgtccgcgtc
ggacccaccactggagccacagtatga
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