Shewanella sedimentimangrovi: JYB85_08585
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Entry
JYB85_08585 CDS
T07846
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB85_08585 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_08585 (ruvB)
Enzymes [BR:
ssem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYB85_08585 (ruvB)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB85_08585 (ruvB)
RecFOR pathway proteins
JYB85_08585 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_16
TIP49
AAA_3
AAA_14
Mg_chelatase
AAA_22
nSTAND3
NB-ARC
RNA_helicase
DUF815
AAA_33
Bac_DnaA
AAA_24
AAA_17
AAA_2
Rad17
AAA_18
AAA_25
NTPase_1
TsaE
NPHP3_N
NACHT
DUF4129
AAA_11
ABC_tran
ATPase_2
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QSX38841
LinkDB
All DBs
Position
1992485..1993489
Genome browser
AA seq
334 aa
AA seq
DB search
MIEADRLIQPQLQGQDEVIDRAMRPKLLDEYTGQDETRAQLKVFIQAAKNRGEALDHMLI
YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHRLSP
VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRARFGIPLR
LEFYNVKDLSSIVARSAKVMEVPMDEEGAHEIARRSRGTPRIANRLLRRVRDYAEVRHDG
VITATVAQQALDLLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV
LEPFLIQQGFIQRTPRGRIATARAYGHFDIIKPD
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgatagaggctgacagactgatccaaccccagcttcagggccaggacgaagtcatagac
agggcgatgcgccccaagctgctggacgagtataccggccaggacgagacccgggcccag
ctcaaggtctttatccaggcggcgaagaatcgcggcgaagccctcgaccatatgctgatc
tacggcccaccgggtctgggtaaaactaccctggccatgatagtggccaacgagatgggg
gtgaacatcaagtccacctccgggcccgtgctggaaaaggccggcgatctggcggcgctg
ctgaccaatcttgagcccggtgatgtgctgttcatcgatgaaatacacaggctcagcccc
gtggtggaagaaatcctttatccggccatggaagactatcagttggatatcatgataggc
gaggggcctgcggcccgctccatcaagctggatctgccgcctttcaccctggtgggtgcc
accacccgtgccggctcactgacctcgccgctgagggccagattcgggatcccgctgcga
ctggagttctataacgtcaaagatctcagctcgatagtggcacgctcggccaaggtgatg
gaagtgcccatggacgaggagggcgcccatgagatcgcccgccgctcccgcggcacgccg
cgtatcgccaaccgtttgctgcgccgggtgcgcgattatgccgaagtgcgccatgacggg
gtgataaccgcgaccgtggcccagcaggcgttggatctgctggatgtggatgccgaaggc
ttcgattacatggacagaaagctgctactggccatcattgacaagtttatgggcgggccc
gtgggcctggacaacctggcggcagccataggtgaagagcgcgaaaccatagaagatgtg
ctcgagcccttccttatccagcagggttttattcagcgtacccccaggggacggatagcg
acggccagggcctatggtcatttcgatattattaaacccgactga
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