Shewanella sedimentimangrovi: JYB85_09875
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Entry
JYB85_09875 CDS
T07846
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssem01002
]
JYB85_09875
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ssem01011
]
JYB85_09875
Peptidases and inhibitors [BR:
ssem01002
]
Cysteine peptidases
Family C82
JYB85_09875
Peptidoglycan biosynthesis and degradation proteins [BR:
ssem01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
JYB85_09875
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QSX35699
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All DBs
Position
complement(2283663..2285069)
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AA seq
468 aa
AA seq
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MSLRLLSPGIGLAGAFFLGYLCLSAEIVWADSNTVAAGKVLAEHARLLALASQDPSLERY
ARELESDSLSAQLEYFDVAAEAIADFWRARQVGLPVDVAGGDKLSQAAGLEPFPNQFMLT
VNRVRQLLWLDSHADWPLISPRGLLRPGDSHGSIPLIGQRLWLLGDLKTEPDNSTFYDDR
LKLAVQQFQARHGLKQDAIIGPLTLQWLNRSPLERAQILARNFVQFVMDSSALGERYLLV
NIPAFELVLVDGGEEVLRSRVIVGRTYRQTPLLSGEISNVVLNPSWRVPKKLMRKDVLPK
VRKDGSYLREKQFDVFDSQGQLVEHSDAEWQQLASSQFPFNLEQRPGTHNALGQFKFHFA
NEASVYLHDTPEKELFEHSDRALSSGCIRVDKVHELANWFADNLIRDRRMWDSMLGGRER
TQWFSLTEKVPVHLVYWTAWMDGEQQAQFRNDIYHLRQNTPMLTAAHP
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgaggttactgtctccgggaatagggttggcgggggcattttttctggggtat
ttgtgcctgtccgcagaaattgtgtgggccgacagcaataccgtggctgcgggaaaggta
ttggccgagcatgcgcggctgctggctctggccagtcaggacccaagccttgagcgctat
gccagggaactggagtcggattccctgtcagcccaactggaatactttgatgtggcggcc
gaagccattgccgatttctggcgtgccaggcaggttggactcccggtcgatgtggcgggc
ggggataaacttagccaggcagcagggttggagcctttccccaaccaatttatgctgacg
gtaaaccgggtaaggcaactgctttggctcgacagccatgcagattggccactgatatcc
ccccgtgggttgctgagacccggcgacagccatggcagtattccgctgattggccaacgt
ttgtggctgctgggggacttgaaaaccgagcccgataacagcacattctatgatgacagg
cttaagctggcggttcagcaatttcaggcccggcatggccttaagcaggatgcgattatc
ggaccgctgacgctgcaatggctgaatcgctcaccgctggagcgggcgcaaattcttgcc
cgcaacttcgtgcagttcgtgatggacagcagtgcgctgggggagcgttatctgttggtc
aacatcccggcttttgagctggtgctggtggatggcggtgaagaagtcctgcgctcgcgg
gtcatagtggggcgcacctaccgccagacgcccttgctgagcggtgagatctccaacgtg
gtgctcaatcccagctggcgggtgccaaaaaaactgatgcgcaaggatgtgcttcccaag
gtccgcaaggacggcagctacctgcgcgagaaacaatttgatgtctttgatagccaaggg
cagttggttgagcactcagatgcggaatggcagcagcttgcctccagtcagtttcctttc
aatctggagcagcgacccggtacccacaatgccctggggcaattcaagtttcactttgcc
aacgaagccagtgtctatttgcacgacaccccggaaaaagagctgtttgaacacagcgac
agggccctgtcttcgggatgcattcgggtggataaggtgcatgaactggccaattggttt
gccgacaacctgatcagggacagacgcatgtgggacagcatgttggggggccgggagcga
acccaatggttttccctgacagaaaaagtacctgtgcatctggtgtattggacggcctgg
atggacggcgagcaacaggcacaatttcgtaatgacatttaccacttacgccaaaatacc
cccatgctgacggcggcacacccctga
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