Shewanella sedimentimangrovi: JYB85_10115
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Entry
JYB85_10115 CDS
T07846
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03030
DNA replication
ssem03430
Mismatch repair
ssem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB85_10115 (holB)
03430 Mismatch repair
JYB85_10115 (holB)
03440 Homologous recombination
JYB85_10115 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssem03032
]
JYB85_10115 (holB)
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_10115 (holB)
Enzymes [BR:
ssem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYB85_10115 (holB)
DNA replication proteins [BR:
ssem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYB85_10115 (holB)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYB85_10115 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
QSX35738
UniProt:
A0ABX7QYQ3
LinkDB
All DBs
Position
complement(2337927..2338844)
Genome browser
AA seq
305 aa
AA seq
DB search
MIQMPWLSAPLGSFMQLLMAGRLPHAILVGMDGGLGAEHLLGDIAKAALCLTPTAKGACG
HCKGCQLIAAGNHPDLYRVQADGHQIKIDQIRSLCQDLTSTSQQGGRRVAIIYEAERMNI
AAANALLKTLEEPGRDTLLLLQSNQSARLLPTLVSRCQRLPCQEPSPEVVSTWLRGLSPE
GEDVSWCLPVCGGPVKLAELLQGDGYKQLSQLRKDWRQSLSSGHLYASLISITEEQITDA
LKVLYIELKSDLERGWPQDAFQRNNIARLAAEIMHVCQGLTAMPNVNCQALCQKVVLDYQ
RIVSS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgatacagatgccctggcttagtgctccccttggcagtttcatgcaattgctgatggca
ggccgcttgccccacgccatcctggtggggatggacgggggattgggcgccgaacacttg
cttggcgatattgccaaggcggcgttgtgcctgacgccgaccgcaaaaggggcctgtggt
cattgcaagggctgtcaattgattgccgcgggtaaccatccggatctgtaccgggtgcag
gccgatggtcaccaaatcaagatcgaccaaatccggagcctgtgtcaggatctgaccagc
acctctcagcaggggggcagacgggttgccataatctacgaggcagagcgcatgaacata
gccgctgccaacgcgctgctgaaaaccctggaagaaccggggcgagacaccttgttgctg
ctccaaagtaaccagtcagcgcgcttactgccgactttggtcagccgctgtcagcgcttg
ccatgccaggaaccttcgcccgaagttgtctctacctggttgcggggcttgagtccggaa
ggggaagatgtcagctggtgtctgccggtatgtggcggtccggtaaagctggctgagtta
ttgcagggtgatggctacaaacaactgtcacaactgagaaaagattggcgccaaagtttg
tcgagcggacatctctatgctagtttgatatctataactgaagaacaaattactgatgca
cttaaagttttatatatcgaactgaaatccgatctagaacggggctggcctcaggatgcg
tttcagcgtaataatatcgcccggcttgccgccgaaattatgcatgtttgtcagggatta
actgcaatgccgaatgtgaattgtcaggcattgtgtcaaaaagtcgttttggattatcag
cgaattgtaagcagctaa
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