Shewanella sedimentimangrovi: JYB85_11245
Help
Entry
JYB85_11245 CDS
T07846
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB85_11245 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_11245 (xthA)
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
JYB85_11245 (xthA)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
JYB85_11245 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
QSX35926
LinkDB
All DBs
Position
2585119..2585931
Genome browser
AA seq
270 aa
AA seq
DB search
MKIVSFNINGLRSRLHQLQALIDTQQPDIIGLQETKVHDEAFPLEDVLAMGYKVHYHGGK
AHYGVALLSKDEPESVSKGFPWDEEDAQRRLIMGQFRQANGRLLTVINGYFPQGESRDHE
TKFPAKRKFYADLQRLLSESFSPDQDIAVIGDINISPIDLDIGIGEVNAKRWLKTGKCSF
LPEEREWLAKLKSWGFDDSFRLLHPEQDGVYSWFDYRSKGFDDNRGLRIDVILTTASLSQ
RLKASGVDYELRAMEKPSDHAPVWSEFSPA
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgtttccttcaatatcaatggcctgcgctctcgcctgcaccagttgcaggcg
cttatcgacacccagcagccggatatcataggcctgcaggaaaccaaggtacacgatgag
gccttcccactggaagacgtgctggccatgggctacaaggtgcattaccacggtggcaag
gcccattacggcgttgccctgctgtccaaagacgagcctgaatccgtgtccaagggtttc
ccctgggatgaagaggatgcccagcgccggctgatcatgggccaattccgccaggccaat
ggccgactgttgacagtgatcaacggctatttcccccagggtgaaagccgtgaccacgaa
accaagttccccgccaagcgcaagttctacgccgatctgcagcgcctgctcagcgaatcc
ttcagtccggatcaggacattgccgtgataggtgatatcaatatctcaccaatcgatctc
gacataggcataggcgaagtgaatgccaaacgctggctaaagaccggcaagtgcagcttc
ctgccggaagagcgcgagtggctggcaaagcttaaatcctggggctttgatgacagcttc
cgtctgttgcacccggagcaggatggggtttactcctggttcgattatcgcagcaaggga
ttcgatgacaaccgcggcctgcgcatcgatgtgatcctgaccacagccagcctgagccaa
aggctcaaggcctcaggagtggactacgagttgagggccatggaaaagccctcggatcac
gccccggtgtggagcgagttcagtccggcttga
DBGET
integrated database retrieval system
