Shewanella sedimentimangrovi: JYB85_11585
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Entry
JYB85_11585 CDS
T07846
Name
(GenBank) DNA-3-methyladenine glycosylase 2 family protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB85_11585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssem03000
]
JYB85_11585
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_11585
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
JYB85_11585
Transcription factors [BR:
ssem03000
]
Prokaryotic type
Helix-turn-helix
AraC family
JYB85_11585
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JYB85_11585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
QSX35990
LinkDB
All DBs
Position
complement(2663510..2664952)
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AA seq
480 aa
AA seq
DB search
MPNLPTPQACREARLSRDARFDGLFFVGVLTTGIYCRPVCPAVAPKEENVRYFASAQAAA
HAGLRPCLRCRPESAPGSFAWKGTGTTLERALKLIDQGLLNDGGDNQAMEHLAERLGISS
RYLRRLFQEQLGLSPKQYADYQRLLFAKQLLHQTDMKITDVAMAAGFGSLRRFNEVFRDT
LQLTPSQLRQKRGVQAQTCLLLNYRPPYDAQAMLAFFRLRAVDGMEWFTSQEGEPCYGRT
LRLNGLLAWFEACHEPEQHRFRVRIGFDEGSDMSQLRPFVMAIRRILDLDADMDSVARCL
PLGLVTEGKALPRLPGAGSMFEAACRAILGQQVSVKQATQLLGKLVRECGERRTVAGREL
WFFPAAGALAQATLDELRMPGSRKEALRALGAKLDAEPDMGADAMLAIKGIGPWTVNYAR
MRGEGDPNVLLVGDLVVRKRLQAVSQRQGEAIDTDALAKQVAPWGSYLTLVLWAMEDSPS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacttacctacgccccaggcttgccgcgaagccagactcagtcgtgatgcccgc
tttgacggactgttctttgtcggggtgctgaccacgggcatttattgccgccccgtgtgt
ccggccgtggcccccaaggaagaaaacgtgcgttattttgccagtgcccaggccgcggcc
catgcggggctgcgtccttgcctgaggtgccgtcccgagtcggctcctggctcctttgcc
tggaagggcacgggcaccacgctggagcgggcgctgaaactgatagaccaaggcttgctg
aatgatggcggcgacaaccaggccatggaacatctggccgagcggcttgggatcagcagt
cgctatttgcggcgcctgtttcaggagcaattggggctgtcgcccaagcaatacgcggat
taccaacggctgctgtttgccaagcagctgttgcatcaaacagacatgaaaatcacagac
gtggccatggccgccggttttggcagtctgaggcgctttaacgaagtattccgtgacacc
ttgcaactgacaccgagtcagttgcggcagaaacgtggtgtgcaggcacagacctgcctc
ttgctcaactaccgcccgccctatgatgcacaggccatgctggcatttttccggctgcgg
gcggtcgatggcatggagtggtttaccagtcaggaaggcgagccctgttacgggcgaact
ctgaggctcaacggcctgctggcctggtttgaggcctgccatgaacccgagcagcacaga
ttcagggtgcgtatcggtttcgacgagggcagcgatatgagtcagctgcggccctttgtt
atggccattcgccgtatcctggatctcgacgccgatatggacagcgtcgcccgttgcctg
ccgcttgggctggtcaccgaaggcaaggcgctgccgcgtttgccgggtgccggtagcatg
tttgaggcggcctgccgcgccatattggggcaacaggttagtgtcaaacaggccacccaa
ctgctgggcaagctggttcgggaatgcggtgagaggcgtaccgtggccgggcgtgaactg
tggtttttcccggcagccggcgccctggcacaagccaccctggatgaattgcgaatgccc
ggcagtcgcaaggaggcgctgcgcgccctgggggccaaattggacgccgaacccgatatg
ggcgccgatgcgatgctggccatcaagggcataggtccctggaccgtcaattacgccaga
atgcgcggcgagggcgatcccaatgtgttgctggtgggcgatcttgtggtgcgtaaacgc
ctgcaggccgtgtcacagcgccagggagaggccatagatactgatgccctggccaaacag
gtggcgccctggggcagctacctgacgttggtgctgtgggccatggaggactcgccgtca
tga
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