KEGG   Shewanella sedimentimangrovi: JYB85_11680
Entry
JYB85_11680       CDS       T07846                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
ssem  Shewanella sedimentimangrovi
Pathway
ssem02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ssem00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    JYB85_11680
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:ssem02022]
    JYB85_11680
Two-component system [BR:ssem02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   JYB85_11680
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_2 AAA_16 AAA_3 Mg_chelatase AAA AAA_7 FleQ HTH_50 ATPase
Other DBs
NCBI-ProteinID: QSX35997
LinkDB
Position
2676159..2677544
AA seq 461 aa
MSSPQLENIQVLIVDDEHHIGTVLVQLFELEGLSAVHTTDPRTVSAALSRDWPGVIVSDV
NMPALDGISLLSKIRAIDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVV
KRALEKRALTLENRNLKRELESHKVPGPRILGHSPGIVHMRHIIDRVLDTPADVLIEGET
GTGKELVARYLHDHSNRQGANFVAINCGAIPENLIESELFGAEAGAFTGVDKTRIGKFEY
ANGGTLFLDEIESTPMSLQVKLLRVLEDRRVERLGSNKSIPLDIRVVAATKVDLKALSDK
GEFRQDLLYRLNLVTVPIPPLRERREDIPLLFLHFARLASARYHRELIAPSSAQQALMSS
HDWPGNVRELRNLAERYVLLGAEAAFAGNLGTSSQLHSSMSLTQRVEFFEKMLLEEALSH
NKGSIKLTMEQLELPRKTLYDKMRKYELDRKHYLNFDSGED
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgagcagtccgcaacttgaaaatatccaggtacttatcgtcgatgatgagcatcatata
ggcacagtgttggtgcaattgtttgagctggaaggcttaagtgcggtccacaccacggat
ccgcgcaccgtgagcgccgccctgagccgcgattggcccggcgtcatagtatcggacgtc
aacatgccggcccttgacggtatcagcctgctctccaaaattcgcgccatcgatgcggat
ttgcctgtggtgctgctcaccggtttcggcgatatcgccatggcggtcaatgcgcttaag
caaggcgcctacgatttcctggaaaaacccttcaataacgagcatatgctggatgtggtc
aagcgggcgctggagaaacgggccctgacgctggagaaccgaaacctgaaacgggaactg
gaatcccacaaggtgcccgggccaaggatcctcggccacagccccggcatagtgcatatg
cgccatatcatagacagggtgctggataccccggcggatgtgcttatcgagggcgaaacc
ggcaccggcaaggaactggtggcccgctacctgcacgatcacagtaatcgccagggagcc
aactttgtcgccatcaactgcggcgccattccggaaaatctgattgagagcgaactgttc
ggcgccgaggccggggcctttaccggggtggacaaaacccgtatcggcaagttcgagtac
gccaatggcgggaccctgtttctcgacgaaatcgaaagcacccccatgtccttgcaggtc
aagctgctgcgggtactggaggacagaagggtggaacgcctgggatcaaacaaaagcatc
cccctggacattcgggtggttgccgccaccaaggtggatctcaaagccttatccgacaaa
ggcgaatttcgccaggatctgctctaccgcctcaacctggtgacagtgcccatcccgccg
ctgcgggaacgtcgtgaagacattccgttgctgtttctgcatttcgcccgcctggcgtcg
gcccgttaccacagggaactcatagcgccaagcagcgcccagcaggcactgatgagttca
cacgactggcccggcaacgtccgcgagctgcgcaatctggccgaacgttacgtgctgctg
ggagccgaagcggcctttgctggcaatctgggaacaagcagccagctgcattcgagtatg
tcattgacccaaagggtggagtttttcgagaagatgttgctggaagaggccctcagtcac
aacaagggatccatcaagttaaccatggagcaactggagctgccccgcaaaaccctgtac
gacaagatgcgcaagtatgaactcgaccgcaaacactatctcaatttcgacagcggcgaa
gactga

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