Shewanella sedimentimangrovi: JYB85_11920
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Entry
JYB85_11920 CDS
T07846
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00521
Streptomycin biosynthesis
ssem00523
Polyketide sugar unit biosynthesis
ssem00525
Acarbose and validamycin biosynthesis
ssem00541
Biosynthesis of various nucleotide sugars
ssem01100
Metabolic pathways
ssem01110
Biosynthesis of secondary metabolites
ssem01250
Biosynthesis of nucleotide sugars
Module
ssem_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
JYB85_11920 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
JYB85_11920 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
JYB85_11920 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
JYB85_11920 (rfbB)
00525 Acarbose and validamycin biosynthesis
JYB85_11920 (rfbB)
Enzymes [BR:
ssem01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
JYB85_11920 (rfbB)
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Paralog
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
Gp_dh_N
Motif
Other DBs
NCBI-ProteinID:
QSX36044
LinkDB
All DBs
Position
complement(2738843..2739919)
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AA seq
358 aa
AA seq
DB search
MRILVTGGAGFIGSAVIRNIIENTQDSVVNIDKLTYAGNLESLVTIEDNERYSFEQVDIC
DRAELDRVFNTYRPDAVMHLAAESHVDRSIAGPADFIETNIVGTYTLLEAARAYWNGLEE
VRKATFRFHHISTDEVYGDLPHPDEQGGVLPLFTECTSYAPSSPYSASKASSDHLVRAWR
RTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGTPLPVYGKGDQIRDWLYVEDHARA
LYKVVTDGAVGETYNIGGYNEKRNLEVVQTICSILDSLVPKDTKYEDQIIFVEDRPGHDR
RYAIDSSKIQRELGWVPIETFETGLKKTIEWYLANREWCQHVKDGSYQRERVGIEVYT
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgagaattcttgtcacaggtggagcgggttttattggctcggcagtcattcgtaatatc
attgaaaacacacaagatagtgtagttaatatagataaactcacttatgcaggtaattta
gagtcgctagttacaattgaagataatgaacgttattcttttgaacaagtcgacatttgt
gatcgagccgagttagaccgggtttttaatacttaccgtccggatgcggttatgcatctt
gcggcagaaagccatgttgatcgctccattgcaggcccagcggattttattgagaccaac
atcgtaggcacgtataccctgcttgaggctgcccgagcctattggaatgggttggaagag
gtgcgcaaagcaacttttcgcttccatcatatctccaccgatgaggtttatggtgatttg
ccgcacccggatgagcaaggtggtgtactgcctctgtttaccgaatgtacatcatatgcc
ccaagcagcccatactctgcgtccaaagcctcgagtgatcatttggtgcgcgcttggcgg
cgcacctacggactgccaaccattgtgaccaattgctctaataattatggtccttatcac
tttccggaaaagcttattccattggtaatcttgaatgctcttgaggggacacctcttccg
gtatatggcaagggcgatcaaatccgtgactggttatacgtagaagatcacgcaagggca
ctctataaagttgtaacagatggcgctgttggtgagacctacaatattggtggttataac
gaaaaacggaacttggaagtagttcaaacaatctgctcaatcttagattcattagtgcca
aaagatacgaagtatgaagaccagattattttcgtagaagaccgacctggtcatgacaga
cgctatgcaattgattcaagtaaaatacagcgtgagcttggctgggtgccgattgaaaca
tttgaaactggacttaaaaagactattgaatggtatttggctaaccgagaatggtgtcaa
cacgtaaaagatggaagctatcagcgtgaacgtgtaggtatagaggtatatacataa
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