Shewanella sedimentimangrovi: JYB85_13015
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Entry
JYB85_13015 CDS
T07846
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssem03016
]
JYB85_13015 (truD)
Enzymes [BR:
ssem01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
JYB85_13015 (truD)
Transfer RNA biogenesis [BR:
ssem03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JYB85_13015 (truD)
Prokaryotic type
JYB85_13015 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QSX36235
LinkDB
All DBs
Position
complement(2964188..2965264)
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AA seq
358 aa
AA seq
DB search
MNELTFLHGAPTVSADIRSRNSDFVVQEILPFLPSGDGEHHLLHVRKDGLNTVQVAEMLA
RFAKVHPKEVTFAGQKDKNAVTEQWFGVRIPGKDTPAWTELNSEQLTILSSARHNKKLRT
GALSGNRFTLTLRNVSDMAALEARLALIAQSGVPNYYGEQRFGHDGRNLVQARQMFQGRK
VKDRNKRSIYLSAARSMLFNEVVSGRLARIGLELLDGDCVMLAGSRSFFVAEQWDDTLKG
RLAEGDIQLSAPQWGRGQQLSQGAAAALETELLEPFTLERDGLEQAGLEQERRPLLLKPE
TLSHKVDGDTLVLDFILPAGSFATSVLRELCQYTDVQEQAWREAVANKAEEADVPAGQ
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattgaccttcctccatggcgcacccactgtcagcgccgatatccgcagccgc
aacagcgactttgtcgtgcaggagatcctgccattcttgcccagcggcgacggtgagcat
catttgctgcacgtgcgcaaggatggcctcaacacagtgcaggtggccgaaatgttggcc
aggtttgccaaggtgcatcccaaggaagtgaccttcgccggtcagaaggacaagaacgcc
gtgaccgagcaatggtttggtgtgcgtattcccggcaaggacacgccggcatggaccgaa
ctcaacagcgagcagctgaccattttgagttcagcccgtcacaacaaaaagctgcgtacc
ggcgccctcagcggcaaccgctttaccctgacattgcgcaatgtttcggacatggcggcc
ctggaagcgcggctggcgttgatagcccaaagtggcgtgccaaattattacggtgagcag
cgcttcggccacgacggtcgcaacctggtgcaggccagacagatgttccagggccgcaag
gtcaaggacagaaacaagcgcagtatctacctgtcggcggcgcgatccatgctgtttaac
gaggtggtgtcagggcgtttggcgcgcattggtctggaactgctcgacggtgactgtgtg
atgctcgccggcagccgcagtttctttgttgccgagcagtgggatgataccctcaagggc
cgtctcgccgaaggcgatattcagttgtcggcgccccagtggggcagagggcaacagctt
agccaaggtgcggcagcggcgctggaaaccgagctgctcgagccttttacgctggagcgt
gatggcttggagcaggccgggctggagcaggagcgtcgccccctgttgctcaaacccgag
accctgtcccacaaggttgatggtgataccctggtactggatttcatcctgcccgccggc
agcttcgccaccagcgtattgcgggagctgtgtcaatacacggatgtgcaggagcaggct
tggcgggaggccgtggcaaataaggcggaggaagccgatgttcctgctggtcagtaa
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