Shewanella sedimentimangrovi: JYB85_13875
Help
Entry
JYB85_13875 CDS
T07846
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03410
Base excision repair
ssem03430
Mismatch repair
ssem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB85_13875 (recJ)
03430 Mismatch repair
JYB85_13875 (recJ)
03440 Homologous recombination
JYB85_13875 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_13875 (recJ)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JYB85_13875 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JYB85_13875 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYB85_13875 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QSX39125
UniProt:
A0ABX7R8M2
LinkDB
All DBs
Position
complement(3141622..3143346)
Genome browser
AA seq
574 aa
AA seq
DB search
MYHQIVRRPQVDDSHLPSHLHPLLKQLLARRGTKAEECEPELNRLLRPETMKGLAAAAVL
VADAMAAGRKILIVGDFDADGATSTSVCLLALAMMGAGNTDFLIPNRFDFGYGLSVPLVA
VAKERGAELLITVDNGISCVEGVAAAKAAGMQVVITDHHLPGAELPLADAIVNPNQPGCT
FASKSIAGVGVAFYLMLALRAELRSRDWFVSRGLAEPNLACLLDIVALGTVADVVSLDAN
NRILVDAGLKRVRSGRCRPGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMSLG
VETLLCDDFMQARRMAAELDGLNAERRELEAGMQQEALASLQRLSLADSELPWGIALYRD
DWHQGVIGILASRIKDRYHRPVIAFADAGDGEIKGSARSIKGLHMRDLLELINSRHPGLL
LKFGGHAMAAGLSLRATDFGAFAAAFEQAVQQLLAPEQLTGEILSDGELEPRWLTLETAE
LLRGAGPWGQGFEEPLFDGRFRLLQQRLVGDKHLKMVLETGCGSLMLDAIAFNIDTAIWP
DAGIREVQLAYRLDVNEFRGNQSLQLLVEQLQPL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgtatcaccagatagtccgacgcccccaggtggatgacagtcatctgccaagccattta
catcccttgctcaaacagctgctggcccgacgcggaaccaaggccgaagagtgtgagccg
gaattaaaccgtttactcaggcccgagaccatgaagggattggcagcggcggccgtattg
gtggccgatgccatggcggcggggcgaaagattttgatcgtgggtgattttgatgccgac
ggtgccacctccaccagcgtctgcctgctggcgctggccatgatgggggccggcaacacc
gactttttgatccccaatcgttttgactttggctacggcctgagtgtgcccttggtggcg
gtggccaaagagcgcggggccgagctgcttatcacagtcgataatggcatttcctgtgtt
gagggagtggcggccgccaaggcagccggtatgcaggtggtcattacggatcatcacctg
ccgggcgcagaattaccgcttgccgatgccatagtcaatcccaaccagccgggttgtacc
tttgccagcaagtccattgccggggttggggtggccttctaccttatgctggcactgcgg
gccgagctcagaagccgcgattggtttgtctccaggggattggcagagcccaacctcgcc
tgcctgctggacattgtggccctgggcacagtggccgatgtggtcagcctggacgccaat
aaccgcattttggtggatgcgggcctcaaacgggtgcgcagcggtcgctgtcgtcccgga
attaccgccttgctggaagtggccaagcgtaatcccgcccggattgtggcctcggatttt
ggttttgccgtcggtcccaggctcaatgccgccggtcgcctagatgagatgtccctcggg
gttgaaaccctgctgtgtgacgatttcatgcaggccagacgcatggccgccgagcttgac
ggtctcaacgccgagcgccgtgaactggaggccgggatgcagcaggaggcgctggccagc
ctgcagcgcctgagcctggcagacagcgaattgccctggggcatagccctttaccgggat
gactggcaccagggggtgatcggcatactggcgtcgagaattaaggacaggtatcacagg
cctgtgattgcctttgccgatgccggcgatggcgaaatcaagggctcggcccgttccatc
aagggcctgcatatgcgcgatctgctggaactgatcaacagccgtcatccggggctgctg
ctcaagttcggtggccatgccatggcggcgggcttaagcctgagggccacggattttggc
gctttcgcagccgcctttgaacaggcagtgcagcagctgctggcgcctgaacagttaacc
ggtgaaattttgagtgacggtgaacttgagccccgctggttaaccctggagactgccgag
ctgctgcgcggcgccggtccctggggccagggatttgaagagccgttatttgacggccgg
tttcgcttgttgcaacagcgtctggtgggcgacaaacatctgaaaatggtgctggagacc
ggctgtggcagcctgatgcttgatgccattgccttcaatatagacacagccatctggccc
gatgccggtatacgcgaggtgcaactggcctatcggttggatgtgaacgaatttcgcggc
aatcagagcctgcagctgctggtggagcagctgcagccgctgtga
DBGET
integrated database retrieval system
