Shewanella sedimentimangrovi: JYB85_14090
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Entry
JYB85_14090 CDS
T07846
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_14090 (phrB)
Enzymes [BR:
ssem01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
JYB85_14090 (phrB)
DNA repair and recombination proteins [BR:
ssem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
JYB85_14090 (phrB)
Prokaryotic type
JYB85_14090 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
FxsA
Motif
Other DBs
NCBI-ProteinID:
QSX36417
LinkDB
All DBs
Position
complement(3187167..3188573)
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AA seq
468 aa
AA seq
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MNLLIWFRQDLRVSDHQALWAACEEARDTGARLYALYIATPKQWQAHDVGPMQLDFIERN
LNCLAASLAALGIELELMTVADFAAVPAALGQYLAQRNISKVFASEEVELNERRRDAGLL
ASGIDLRLFGGHCLLPPGTVTTDAGAMYRVFTPFARRWCALASRQAIRPLPAPQPLGPAK
VPSHLRLDVEKRASDYWPSGEVAARERLLAFSGGPLGAYGQQRDFPAMAGTSSLSPYLAL
GVLSPRQCMAAVLDAYPAALVEEGSPGRNWLMELVWREFYRHLLQAYPGLSRGENFNALG
DGIRWRNDATEFAAWCEGRTGYPIVDAAMRQLNTIGWMHNRLRMLAASFLTKHLLIDWRW
GEAYFRRQLVDGDLAANNGGWQWSAGTGCDAQPYFRVFNPQLQSERFDPEARFIRHWLPE
LAGWPLKALHRPAKRAPDLFAETYPAPIIEHSYARERALSVLAVLKRG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgcttatctggttccggcaggacctgcgcgttagcgatcaccaagccctgtgg
gccgcctgtgaggaagccagggacactggggccaggctgtacgccctctatatcgcgaca
ccaaagcagtggcaggcccatgatgtgggacccatgcagctggattttatcgaacgcaat
ctcaactgcctggccgcgtcgctggcagcattgggcattgagttggaattgatgacggtg
gcggactttgccgccgtacccgccgcccttgggcaatacctggcgcagcgcaatatcagc
aaggtgttcgccagcgaagaagtggaacttaacgagcgccgccgtgatgccgggctgttg
gcgtcgggcattgacctgcgcctctttgggggccactgcctgttgccgccgggcacagtc
accacggacgcgggggccatgtaccgggtatttacgcccttcgcccgccgctggtgtgcc
ttggccagccgccaggccatacgccctttgccggcgccacagcccttggggccggcaaag
gtgccctcgcatttgcgccttgacgtggaaaagcgggcttccgattattggccaagcggt
gaagtggccgccagagagagattgctcgcattcagcggcggtccgcttggagcttacggc
caacagcgtgactttccggccatggcgggaaccagcagcctgtccccttatctggccctt
ggggtgctcagtccccgccagtgcatggccgcggtactggatgcgtatcccgccgcactg
gtggaggagggcagtcccggccgcaactggttgatggaactggtgtggcgcgaattctat
cgacatctgctgcaggcctaccccggtctgagtcgaggcgagaatttcaacgccctgggt
gacggcatacgttggcgtaacgatgcaacagaatttgctgcctggtgcgaagggcgcacg
ggttatcccatagtcgatgccgccatgcgccaactcaataccattggctggatgcacaac
cgcctgcggatgcttgctgccagctttcttaccaagcatctgctgatcgactggcgttgg
ggcgaagcttacttccggcgccaactggtggatggcgatctggccgccaacaacggtggc
tggcagtggtccgccggtaccggctgcgatgcccagccctatttcagggtcttcaatccc
cagctgcaaagtgaaaggttcgaccccgaagctcgctttattcgccattggctgccggag
ctggccggctggccccttaaggcgctgcacagaccggcaaaacgtgccccagacttattt
gccgagacttaccccgcgcccatcatagaacacagctatgcccgggaacgtgccctcagt
gtccttgccgtgctcaagcgtggctga
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