Shewanella sedimentimangrovi: JYB85_15420
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Entry
JYB85_15420 CDS
T07846
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
JYB85_15420 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssem03019
]
JYB85_15420 (orn)
03009 Ribosome biogenesis [BR:
ssem03009
]
JYB85_15420 (orn)
Messenger RNA biogenesis [BR:
ssem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYB85_15420 (orn)
Ribosome biogenesis [BR:
ssem03009
]
Eukaryotic type
Pre-60S particles
RNases
JYB85_15420 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QSX36649
UniProt:
A0ABX7QZH3
LinkDB
All DBs
Position
complement(3469574..3470119)
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AA seq
181 aa
AA seq
DB search
MTADARNLIWIDLEMTGLEPEVDRVLEIATLVTDQELNIIAQGPVLAIHQSDEVLAAMDE
WNQTHHGASGLIDRVKASKVDEAQAVAETIAFLEQHVPKGASPMCGNSIGQDRRFLNKYM
RELEDFFHYRNIDVSTIKELVKRWQPEVMKGFSKQGSHQALMDIQESIAELKFYRDKVFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggatgcgagaaatcttatttggatagatctggaaatgaccgggcttgagccc
gaggttgaccgagtgctggaaattgccaccctggtgacagatcaagagctgaatattatt
gcgcagggaccggtattggctattcatcaatccgatgaggtattggcggccatggacgag
tggaaccagacgcatcatggtgcctccggcctgattgacagggtcaaggccagcaaggtg
gatgaagcccaggccgtggccgagaccattgcctttctggaacagcatgtgcccaagggc
gcgtcacccatgtgtggcaacagcataggtcaggacagacgtttcctgaacaagtacatg
cgtgaactggaagacttctttcactatcgcaatattgatgtcagtacaatcaaagagttg
gttaagcgttggcagccagaggtgatgaaaggtttcagcaaacaaggcagccatcaggcc
ctgatggatattcaggagtccattgccgagctcaagttctaccgggacaaggtatttaaa
atttga
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