Shewanella sedimentimangrovi: JYB85_15750
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Entry
JYB85_15750 CDS
T07846
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem02020
Two-component system
ssem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JYB85_15750
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JYB85_15750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssem03021
]
JYB85_15750
Transcription machinery [BR:
ssem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JYB85_15750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF5039
Motif
Other DBs
NCBI-ProteinID:
QSX36710
LinkDB
All DBs
Position
3528952..3530433
Genome browser
AA seq
493 aa
AA seq
DB search
MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELDDDQFDSQERS
DSDHREQDDFSEPVTASSNDDSSTLETSDALTQQSMPDELPMDTTWDEVFTAAPASGSGS
MMRDDDMPFQGETSDGLYEHLEWQKNLTPFSDTDMAIATAIIDAIDERGYLTQTTEDILE
AMGDDEVELDEVEAVLKRIQHFDPIGVAARDLSECLLIQLAHFAADTPHLENAKLLIRDH
LDLIAARDFRTLMRKTRLKEDELREAIVLIQSLNPRPGEQVTSGKDEYVIPDVSVSKKNG
RWVVELNPDCMPKLNVNQHYAAMARTSRSQADSQFIRGHLQEAKWFIKSLESRNDTLLKV
ANCIVQFQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKYFF
SSHVSTEDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAELLAEQGINVARRTIAKYRE
AMLIPPSNQRKSL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccagctcaagctgggccaacaactgaccatgacgccgcaattgcaa
caggccatcaggctgttgcaactttcttcacttgaactgcaacaggaaattcaacaagcg
ctggattccaacccattgttggagctggacgatgaccaattcgacagccaggagcgcagc
gattcagaccacagggagcaggacgacttctccgagcccgtcaccgccagcagtaacgat
gacagctccaccctggaaacctccgacgccctgacccagcagtccatgcccgatgaattg
cccatggataccacctgggacgaagtgttcaccgccgcccctgcttccggcagcggctcc
atgatgcgcgatgatgatatgcccttccagggagagaccagcgacggtctttatgaacac
ctggaatggcaaaagaacctcacccctttctcagacaccgacatggccatagccaccgcc
atcatagacgccatagatgaacgcggttacctgacccagaccacggaagacatactcgaa
gccatgggcgacgatgaagtggagctggacgaagtggaagccgtacttaagcgcatccaa
cacttcgaccccataggggtggcggcaagggacctcagtgaatgcctgctgatccagctg
gcccactttgccgccgacacaccacacctggaaaacgccaaactactgatccgcgaccat
ctggatctgattgccgcccgggacttccgcaccctaatgcgtaaaacccgtctgaaggaa
gatgagctgcgtgaagccatagtgctgatccagagcctcaatccccgtccgggcgaacag
gtcacgtccggcaaggacgagtacgttatccccgacgtctctgtgagtaagaaaaatggc
cgctgggtggtggagctcaatcccgattgcatgcccaagctcaacgtcaatcagcattac
gccgccatggcccgcaccagtcgcagtcaggccgacagccagtttatccgcggccatctg
caggaagccaagtggtttatcaagagcctggaaagccgcaacgacaccctgctcaaggtg
gccaattgcatagtgcagttccagcagggctttttcgaatacggtgaagaagccatgaag
cccatggtgctgaacgacatagccgaagcggtggaaatgcatgaatccaccatttccagg
gtgaccacccaaaagtacatgcatacccctcggggcattttcgaattgaaatatttcttc
tccagccatgtcagtacggaagacggaggagaatgctcgtctacggccatccgcgccttt
atcaagaagttggtggctgcagaaaatcagaagaaaccattgagcgacagcaaaatggcg
gaacttctggcggaacagggaatcaacgttgctagacgtaccattgcaaagtaccgtgaa
gcaatgctgatcccgccgtcaaaccagcgtaaaagcttataa
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integrated database retrieval system
