Shewanella sedimentimangrovi: JYB85_15940
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Entry
JYB85_15940 CDS
T07846
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssem03021
]
JYB85_15940 (rapA)
Transcription machinery [BR:
ssem03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
JYB85_15940 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QSX36748
UniProt:
A0ABX7R0Y3
LinkDB
All DBs
Position
3577121..3580030
Genome browser
AA seq
969 aa
AA seq
DB search
MSFALGQRWISDSESELGLGTVVQVEGRMVGLLFPATGENRMFAQADAPLTRVIFNPGDI
ISSAEGWSLKVSHLEEKNGLVLYHGEHCDTGETTSLRETLLEHNIRFNKPQDRLFAGQID
RLDRFGVRYKSQLLRHQLASSDLLGLQGPRVGLIAHQLWIAHEVGRRHAPRVLLADEVGL
GKTIEAGLIIHQQLQTGRAERVLVIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFAD
HDNPFYTEQLVICSLELLRKKRRLDQALDADWDLMVVDEAHHLEWSEDEPSRAYQVVEAL
AALVPGVLLLTATPDQLGHQSHFARLRLLDPDRFFDYDAFIQEEAGYRAVAEAAEALAGD
KPLSDAAINSLTELLSEKDIAPAIRQIQAPNLDDELHAAAREELLQELLDRHGTGRVLFR
NSRASVKGFPKRIFHSYGYPMPEQYATASRVNAMMGGARTLEAKAAQALSPEKLYQEFDD
NNASWWKFDPRVDWLLDFLKNHRSKKVLVIASRAETALALEEALRTREGIAATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQKHDVQIHLPFLEDTAQEKLLRWYHEGLNAFELTCPGGHILFGEFREALLQVLAGDAD
EDDAAHLLSATRARYKELKDAMEHGRDKLLELNSHGGSKANALVARLAAADGDTALIAAV
IRLWDIIGLDQEDRGENCIVLRPSEHMMFPTYPGLSEDGVTVTFDRDTALSRDDIALITL
EHPLVQTGLDLITGSETGSTSVAVLKNKALPAGTLFLELIYMAETTAPKSSQLYRYLPPT
PIRVLMDKGGNNLSAKVDYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEAMAAEAL
ADLVEQAGQRMDQQLGGELARLEALKAVNPNIRDEELSFIRNQMQELSGYLGDTQLQLDA
IRLVLVSHA
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgcattagggcaacgctggatcagtgacagcgagtcggaattaggtttggga
accgtggtacaggtggaaggtcgcatggtgggcctgctgtttcctgccaccggcgaaaac
cgtatgtttgcccaggccgatgcgcccctgacccgggtgatcttcaatcccggagacatc
atctccagtgccgagggctggagcctcaaggtcagccatctggaagaaaaaaatggcctg
gtgctctaccacggcgaacactgtgacacaggggaaaccaccagcctgcgggaaaccctg
ctggagcacaatatccgcttcaacaaaccccaggaccgactgtttgccggtcagatagac
cggctcgaccgcttcggggtgcgctataagagccaactgctgcgccaccaactggccagt
tcggatctgctgggcctgcagggccccagggtgggcctgattgcccatcagttgtggatt
gcccacgaagtgggccgccgtcacgcgccgagggtattgctggcggacgaggtgggcctg
ggtaaaaccattgaggccggtttgattatccatcaacagctgcaaaccggccgcgccgag
cgggtactggtaatagtgcccgacaccctgaggcaccaatggctggtggaaatgctgcgc
cgctttaacctgcgcttctctgtctttgacgaggaccgctgtgttgaggcctttgccgat
cacgataaccccttctacacggaacagctggtgatctgctccctggagctgctgcgcaag
aagcgccgcctcgaccaggccctcgacgccgactgggatctgatggtggtggacgaagcc
catcacctggagtggagcgaagatgaaccgagccgcgcctaccaggtggttgaagccctg
gcggccttggtgcccggggtactactgctgaccgctacccccgaccagctggggcaccag
agccactttgcccgtctgcgcctgctggatcccgaccgtttctttgattacgacgccttc
attcaggaagaggccggctaccgcgccgtggccgaggccgccgaggccctggccggagac
aagccattaagcgatgccgccatcaacagcctgaccgaactgctgtcggagaaagacata
gcgccggccatacgccagatccaggcccccaacctggacgatgaactgcacgccgccgct
cgcgaggagctgctgcaggaactgctggaccgtcacggcaccggccgggtgctgttccgc
aacagccgcgcctcggtcaagggcttccccaagcgcatcttccacagctacggctacccc
atgccggagcaatacgccaccgccagccgggtcaacgccatgatgggcggtgcccgcacc
ctggaggccaaggcggcccaggccctgagcccggaaaagctgtaccaggaattcgatgac
aataacgccagctggtggaagtttgaccccagggtcgactggctgctggatttcctcaag
aaccaccgcagcaagaaggtgctggtgatcgccagccgtgccgaaacggcgctggcactg
gaagaagcgctgcgcacccgcgaaggtatagccgccaccgtatttcacgagggcatgtcg
atcattgaacgggacaaggccggggcttactttgcccaggaagagggcggtgcccaggcg
ctgatctgctccgaaatcggctcagagggccgtaacttccagttcgccagccatctggtg
ctgttcgatctgccgctgaacccggacctgctggaacagcgcatcggccgtctcgaccgt
atcggccagaagcacgatgtacaaattcacctgcccttcctggaggacacggcccaggaa
aaactgctgcgctggtaccacgagggcctgaacgccttcgaactcacctgccccggcggc
cacatactgttcggtgaattccgcgaggccctgctgcaggtgctggccggcgatgccgac
gaggacgatgcggcgcacctgctgtcggccacccgtgcccgttacaaggaactcaaggat
gccatggagcacggccgcgacaagctgctggagctcaacagccatggcggcagcaaggcc
aatgccctggtggcgcgcctggcggccgcagacggtgacactgcgctgattgcagccgtg
atccgcctgtgggacatcataggtctcgatcaggaagacaggggcgagaactgcatagtg
ctgcgccccagcgagcacatgatgttccccacctatccaggtctcagcgaagatggggtg
accgtcaccttcgaccgggataccgccctgtcacgggacgatattgccctgatcaccctg
gagcaccccttggtgcagacgggcctggatctgatcacaggttctgaaaccggcagcacc
agcgtggccgtgctcaagaacaaggctctgccggcgggcaccctgttcctggagctgatc
tatatggccgaaaccacggcgcccaagtcgagccagctgtaccgctatctgccccccaca
cctatccgggtgctgatggacaagggcggcaacaacctgtcggccaaggtggactacgag
agcttcgacaagcagttgagcgcggtgaaccgccatatcgccagcaagctggtgaacgct
tcccaaaccctgttgcatccgctgtttgccaagggcgaggccatggccgccgaggccctg
gccgacctggtagagcaggcgggccagagaatggatcagcaactgggcggcgaactggcc
cgtctggaagccctcaaggcggtcaaccccaatatccgtgacgaggaactgagctttatc
cgcaaccagatgcaggagttgtccggctacctcggcgacacccagttgcagctggatgcc
attcgtctggtgctggtgagtcacgcctga
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