Shewanella sedimentimangrovi: JYB85_16375
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Entry
JYB85_16375 CDS
T07846
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssem01002
]
JYB85_16375
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ssem01011
]
JYB85_16375
Peptidases and inhibitors [BR:
ssem01002
]
Cysteine peptidases
Family C82
JYB85_16375
Peptidoglycan biosynthesis and degradation proteins [BR:
ssem01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
JYB85_16375
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QSX36828
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All DBs
Position
complement(3665124..3666551)
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AA seq
475 aa
AA seq
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MPTATEGEDGGRASSPGLIWFDYQGPKSPALRLRKLATDLGIMLPPLPQTAIELTSVDEA
YSAVYLQLARKLSQNGARTLVTSIESLRQRAGNGDLDTMVAELTSPWPQFQNLRPMLSYY
RELSRYEWPSLTPFEFRLGHRTAEIAKLRWMLTQLGDLKPRKTDSYRDAIYDPGLKLGLQ
HFQARHGLEQSGKLDPRTLAALNTSPGERLLQIQTNLWRALSLPVALPEAYIWINLPEFQ
LYVLEQGQNVLQMRVIVGSESTPTPLLSTSLTHFTVNPEWRPPASIIYRELLPNNARNPG
LLARQGFALHSLSSDGAPSLALGRVAPEQLATLLRQYRLVQAPGPANALGKLRFSIRNDE
AIYLHDTPVKSLFSQNGRALSHGCIRLEDPKRLLAFLQSRAPDLDPKAISRALKLTEPRD
FVLTSPIAVIVGYQTAWVSADGILQFREDIYGLDRQHSVLAELEGVKRLSQGSAL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgcctacggctactgaaggggaggacggtggcagagcctcttcccccggactgatttgg
ttcgactatcaggggcccaagtccccggcactcaggttgcgaaagctggccaccgacctc
ggcataatgctgccacccttgccacaaacagccattgagctgacttcggtcgacgaagcc
tatagcgctgtgtacctgcaattagcccggaaactctcccaaaacggtgcaagaacgctg
gtcactagtattgaatccttgcggcaacgggccggcaatggtgacctggacaccatggtt
gctgagctgacgtcaccctggccacaattccaaaatctcagacccatgctgagttattac
cgtgaactaagtcgctatgagtggccgtcattgacgccctttgaattcagattggggcac
aggacggctgagatagccaaattgcgttggatgctgacgcaactgggggacttgaaaccc
aggaaaacagacagctatcgggatgcgatttatgatcccggtctgaaattggggttacaa
catttccaggcccgccatggcctggaacaaagcggcaagcttgatccccgcaccttggcg
gctttgaatacgtcaccaggggaaagactgttgcagatacagactaacctgtggcgtgcc
ttgtctttgcccgtggctttgcccgaagcctatatctggatcaatttgcccgagtttcag
ttgtatgtgctggagcaggggcaaaatgtgctgcagatgagggttatagttggctcagag
tcgacaccgacgccattattatcgaccagcttgacccattttacggtgaaccctgagtgg
aggccgcctgccagtattatctatcgggagttgttgccgaataatgcccgtaatcccggt
ctgcttgcgcgtcaggggtttgctttacacagtttgtcatccgatggtgctccgtcgctg
gcattggggcgggtagctccggaacagttggccacgctgttaaggcaatatcgcttggta
caagcccccggcccggcgaatgctcttgggaaattgcgcttttccatccggaatgatgaa
gccatttatctgcacgatacccccgtcaaatcgctgttttcccaaaacgggcgcgccttg
agccacggctgtattcgcctggaggatccgaagcgcttgctggcttttctgcaatccaga
gctcctgatctggatccaaaggctatctcccgggctttgaagctcaccgagcccagggat
ttcgtgctgaccagccccatagcagtgatagtcggctaccagactgcctgggtgagcgca
gacgggatactgcaattcagggaggatatttatggtctggatcgccagcattcggtattg
gctgagctggaaggtgtgaaaaggctgagccagggaagtgctttatga
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