Shewanella sedimentimangrovi: JYB85_16995
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Entry
JYB85_16995 CDS
T07846
Name
(GenBank) retention module-containing protein
Organism
ssem
Shewanella sedimentimangrovi
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_4
K319L-like_PKD
NPCBM_assoc
Big_9
He_PIG
HemolysinCabind
Motif
Other DBs
NCBI-ProteinID:
QSX36939
LinkDB
All DBs
Position
3801789..3810347
Genome browser
AA seq
2852 aa
AA seq
DB search
MGIAINQQDAVVTQIVGQLRAKDEQGNVRTLNIGDIIHQGEQLIFASDDKFVIEYADGTR
MSEVNMQSQAQTTPASTQMPDLPADATDAEIAALQAQILAGQDPTADLPETAAGAGGGGT
EGGFDYTSVGRDGAETLASAGWDTTGFTTTTLTAQEEPLLTDILPEAPFLANANLTFSDA
ALPLGSTPDAQQVTQDGTLAFSATSGVLSISIDGVAIVTDGIFNGPVTISTSYGVLTISG
VDLANGIMSFSFTQTAAVDHSQGDIFNQLFSLLLTDNLGVTTSSTLTISVGDDAPSGQND
NNSLSEDTSLAVIGNLLANDTQGADTAQVTAAGAGSATNISVGQASQINGSFGVLTLNSD
GSYSYQLNTGLQAVQALAQGQTLNEVFSYVLQDADGDISVQTLTITITGSNDAPVITTEQ
GQDLGTVIEAGNFDDGSFYPGVPSVSGNLSASDVDNGAVLTWSGNADSPFGSFSIDAATG
AWTYILDNSAADSLQEGEVRIETFLVTVTDEFGATATQEVTITIVGSNDAPILSAETSGS
VTEDQNVSAGMLVDSGALSFTDVDLGDEHQMSSIYNGDISWSGGSLTQDQINALLAGFSV
DSNSWDYSIANSLVQFLSVGETITLSFTVTVTDEFGASDSQVVTLTIHGTNDGPVINPPE
EGDADGTVIEAGNFDDGNINPGSPEISGTLTATDADHDAVLTWSGNAEGEFGDFVIDPET
GTWTFTIDNSAADSLQEGETRTETFLVTVTDQNGATSTQEVTITIVGSNDAPILTLDNGG
SVMEDVDVIAGMLSDSGALSFTDVDVGDSHEISTSYNGDASWSGGALTLAEINALAAGFS
ADNDGWEFSIANSLVQFLADGETITLSFTVTVTDEFGASDNQQVNITITGTNDAPTISDI
ADFGFVEALDASNQSLLANGTVNFDDVDTNDLVSVATSLQSGAVWSGGVLDAGLKAALEA
GFSASVTNAAAPGSTGWTFDASNLDLDFLGEGETITLTFRVTVSDGHGGSAYDDVTITIT
GTNDAPTISDIADFGFVEALDASNQSLLANGTVNFDDVDTNDLVSVATSLQSGAVWSGGV
LDAGLKAALEAGFSASVTNAAAPGSTGWTFDASNLDLDFLGEGETITLTFRVTVSDGHGG
SAYDDVTITITGTNDAPTISDIADFGFVEALDASNQSLLASGTVSFDDVDTNDLVSVATS
LQSGAVWSGGVLDAGLKAALEAGFSASATNVAAPGSTGWTFDASNLNLDFLAQGETITLT
FRVTVSDGHGGSAYDDVTITITGTNDAPTISDIADFGFVEALDASNQSLLASGTVSFDDV
DTNDLVSVATSLQSGAVWSGGVLDAGLKAALEAGFSASVTNAAAPGSTGWTFDASNLDLD
FLGEGETITLTFRVTVSDGHGGSAYDDVTITITGTNDAPTISDIADFGFVEALDASNQSL
LASGTVSFDDVDTNDLVSVATSLQSGAVWSGGVLDAGLKAALEAGFSASATNVAAPGSTG
WTFDASNLNLDFLAQGETITLTFRVTVSDGHGGSAYDDVTITITGTNDAPTISDIADFGF
VEALDASNQSLLASGTVSFDDVDTNDLVSVATSLQSGAVWSGGVLDAGLKAALEAGFSAS
ATNVAAPGSTGWTFDASNLNLDFLAQGETITLTFRVTVSDGHGGSAYDDVTITITGTNDA
PTISDIADFGFVEALDASNQSLLANGTVSFDDVDTNDLVSVATSLQSGAVWSGGVLDAGL
KAALEAGFSASATNVAAPGSTGWTFDASNLNLDFLAQGETITLTFRVTVSDGHGGSAYDD
VTITITGTNDAPTISDIADFGFVEALDASNQSLLANGTVSFDDVDTNDLVSVATSLQSGA
VWSGGVLDAGLKAALEAGFSASATNVAAPGSTGWTFDASNLNLDFLGEGETITLTFRVTV
SDGHGGSAYDDVTITITGTNDAPTISDIADFGFVEALDASNQSLLASGTVSFDDVDTNDL
VSVATSLQSGAVWSGGVLDAGLKAALEAGFSASATNVAAPGSTGWTFDASNLNLDFLGEG
ETITLTFRVTVSDGHGGSAYDDVTITITGTNDAPTISDIADFGFVEALDASNQSLLASGT
VSFDDVDTNDLVSVATSLQSGAVWSGGVLDAGLKAALEAGFSASATNVAAPGSTGWTFDA
SNLNLDFLAQGETITLTFRVTVSDGHGGSAYDDVTITITGTNDAPTISDIADFGFVEALD
ASNQSLLASGTVSFDDVDTNDLVSVATSLQSGAVWSGGVLDAGLKAALEAGFSASVTNAA
APGSTGWTFDASNLDLDFLGEGETITLTFRVTVSDGHGGSAYDDVTITITGTNDAVEGEF
AKEIWVPASMAELLNPYDDGYPLHIAVPTDTDTNDVISITNISMAFVDQNVVADIGTLWY
VPDGAVDLVPYDFDNPVNLSATELGTLVYMPGDNGDLDSQLDISLTFTINSGTEQVLGDF
VIHTVPQNSLGDNSVLIGDGSSPLTSGNDQDAFLTVSSGFAEVLNTDPSLGTLDLFTDFQ
KSPFDIPIPGDEIGGTTGQEREDEVSVRLTINGITFIVIAAANGVTDWTFDVDSGLMKAS
VAYDSILMESDLSTTLAQYLAANPVSAGDIWTITYLDNDGGSYQARFVQATFTHELLPDT
AITVTGTDNVDNLIFGTTEGDILTGANLNDEIVGREGNDIIKGLTGDDELLGGSGNDTIE
GGTGADYLIGGLGSDSLDAGIDTDRDILVWDTGSADGSTDDVYHFDPDHDALDLSDILLN
EENGSLEDYFSFSFGGGDTTITIDSNGADPGGDTVTIVLHGTDLSAIYGSANETDIIQGL
LGDNALLVTEPPAPPILPEPNHVVIRDEHSIP
NT seq
8559 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgcaatcaaccaacaggatgcagttgtcacccagatagttggccagctaagg
gccaaggatgagcaaggcaacgttcgcacattaaatattggtgacatcatccaccagggg
gagcaattgatatttgcttccgatgataagtttgtcattgagtatgcagacggcacccgc
atgagcgaagtgaacatgcagtctcaggcacaaacaacgccagcctcaacgcagatgcca
gatctgcctgctgacgctacagatgcggagatagccgccctgcaggcccagatattggca
ggccaggatccgacagctgatttacctgaaaccgcagccggtgccggcggtggtggaacc
gagggtggattcgactacaccagtgtcggccgtgatggtgccgaaaccctcgccagtgca
ggatgggatacaacagggttcaccactacgacgctgaccgcccaggaagaacctctgctg
accgatatactccccgaagccccattcctcgccaatgccaatctcaccttctccgatgct
gccttacccctggggtctaccccggatgcccaacaggttacccaagatggcaccctggcc
ttcagtgccacttccggtgtactgagcatcagcattgacggagtggccattgtgaccgat
ggcatattcaatggacctgtgactatcagcacctcttatggggtgctgactatttccggg
gttgacctggcaaacggtattatgagcttcagctttacccagacagccgcggtcgatcac
agccagggggacatatttaaccagttgttttcgctgctgctgaccgacaatcttggcgtc
accacctcaagcaccctcaccatcagcgtcggtgacgatgctcccagcggccagaatgac
aacaacagtctgtctgaagataccagtctggcggtgatcggcaacctgctcgccaacgac
acccagggcgctgatacagcccaggttaccgcggccggcgccggaagtgccaccaacatc
agtgtgggccaggccagccaaatcaatggcagttttggcgtactgacactcaacagcgat
ggcagttacagctaccaattgaataccggtttgcaggcggtgcaggccctggctcagggc
caaaccctgaatgaggtcttcagctacgtgctacaggacgccgatggcgatatcagtgtc
caaactctgaccataaccatcaccggcagcaacgatgcccccgtcattaccacggagcaa
ggccaggatctgggtacagtaatagaagccggtaacttcgacgatggctccttctatccc
ggcgtcccctctgtcagcggtaacctcagcgccagcgacgtggacaacggtgcagtgctg
acctggagcggtaatgctgacagccccttcggcagtttcagcatagatgcggccacaggt
gcctggacctatatcctcgataacagcgccgccgacagtctgcaggaaggagaggtgcgc
attgaaactttcctcgtcactgtgaccgatgaatttggtgccactgccactcaggaagtg
accatcaccatagtcggcagcaacgatgcgccgatattgagcgccgagaccagtggcagc
gtcaccgaagatcaaaatgtctcagccggcatgctggttgacagcggcgccctcagcttc
accgatgtggatctgggcgacgagcatcagatgagcagtatctataacggcgatatcagc
tggagcggtggcagtctgacccaggatcagatcaatgccctgctggccggtttcagtgtc
gacagcaacagctgggattacagcatcgccaacagcctggtgcaattcctgtccgtcggc
gaaaccattaccctcagctttactgtcaccgtcacagatgaatttggcgccagcgacagc
caagtagtcaccctgaccatccacggcaccaatgacgggcctgtcatcaatccccctgaa
gaaggcgatgccgacggcactgttatagaagcgggtaactttgatgacggcaatatcaat
cccggctctcccgaaatttccggtaccctgacggccacagatgcggatcatgatgccgta
ttgacctggagtggtaacgccgagggtgagttcggtgacttcgtcatagatcccgaaacc
ggcacctggacctttacaatcgacaacagcgctgccgacagtttgcaggaaggcgaaacc
cgtacagaaaccttcctggtcacagtcacagaccaaaatggcgcaaccagcacacaggaa
gtgaccataaccatagtcggcagcaacgatgcgccgatattgaccctggataacggtggc
agcgtgatggaagatgtcgatgtcattgccggtatgctgtctgacagtggagccctcagc
tttaccgatgtcgacgtgggagacagtcacgagatcagcaccagttacaatggcgatgcc
agctggagcggtggtgccctcaccctggcagaaattaacgccttggcggctggattcagt
gccgacaacgacggttgggaattcagtattgccaacagcttggtgcagttcctggcggac
ggcgagaccattaccttaagttttaccgtcactgtaaccgatgaatttggcgccagtgat
aatcagcaggtgaatatcaccatcaccggcaccaacgatgcaccgaccatcagtgacatc
gccgacttcggctttgttgaagcgctcgatgccagcaatcagagcctccttgccaacggt
accgtcaacttcgatgacgtggataccaatgacctggtgagcgtggcgaccagcctccaa
agcggtgccgtctggagcggcggtgtccttgatgccggcctgaaggccgccctggaagcc
ggcttcagtgccagcgtcaccaatgcggctgcaccgggcagcaccggctggacctttgat
gccagcaatctcgacctcgacttcctgggcgaaggcgaaaccatcaccctgaccttcagg
gtaaccgtcagcgacggtcatggcggcagtgcctatgatgatgtcaccatcaccatcacc
ggcaccaacgatgcaccgaccatcagtgacatcgccgacttcggctttgttgaagcgctc
gatgccagcaaccagagcctccttgccaacggtaccgtcaacttcgatgacgtggatacc
aatgacctggtgagcgtggcgaccagcctccaaagcggtgccgtctggagcggcggtgtc
cttgatgccggcctgaaggccgccctggaagccggcttcagtgccagcgtcaccaatgcg
gctgcaccgggcagcaccggctggacctttgatgccagcaatctcgacctcgacttcctg
ggcgaaggcgaaaccatcaccctgaccttcagggtaaccgtcagcgacggtcatggcggc
agtgcctatgatgatgtcaccatcaccatcaccggcaccaacgatgcgccgaccatcagt
gacatcgccgacttcggctttgttgaagcgctcgatgccagcaaccagagcctccttgcc
agcggtaccgtcagcttcgatgacgtggataccaatgacctggtgagcgtggcgaccagc
ctccaaagcggtgccgtctggagcggcggtgtccttgatgccggcctgaaggccgccctg
gaagccggcttcagtgccagcgccaccaatgtggctgcgccgggcagcaccggctggacc
tttgatgccagcaacctcaacctcgacttcctggcccaaggcgaaaccatcaccctgacc
ttcagggtaaccgtcagcgacggtcatggcggcagtgcctatgatgatgtcaccatcacc
atcaccggcaccaacgatgcgccgaccatcagtgacatcgccgacttcggctttgttgaa
gcgctcgatgccagcaaccagagcctccttgccagcggtaccgtcagcttcgatgacgtg
gataccaatgacctggtgagcgtggcgaccagcctccaaagcggtgccgtctggagcggc
ggtgtccttgatgccggcctgaaggccgccctggaagccggcttcagtgccagcgtcacc
aatgcggctgcaccgggcagcaccggctggacctttgatgccagcaatctcgacctcgac
ttcctgggcgaaggcgaaaccatcaccctgaccttcagggtaaccgtcagcgacggtcat
ggcggcagtgcctatgatgatgtcaccatcaccatcaccggcaccaacgatgcgccgacc
atcagtgacatcgccgacttcggctttgttgaagcgctcgatgccagcaaccagagcctc
cttgccagcggtaccgtcagcttcgatgacgtggataccaatgacctggtgagcgtggcg
accagcctccaaagcggtgccgtctggagcggcggtgtccttgatgccggcctgaaggcc
gccctggaagccggcttcagtgccagcgccaccaatgtggctgcgccgggcagcaccggc
tggacctttgatgccagcaacctcaacctcgacttcctggcccaaggcgaaaccatcacc
ctgaccttcagggtaaccgtcagcgacggtcatggcggcagtgcctatgatgatgtcacc
atcaccatcaccggcaccaacgatgcgccgaccatcagtgacatcgccgacttcggcttt
gttgaagcgctcgatgccagcaaccagagcctccttgccagcggtaccgtcagcttcgat
gacgtggataccaatgacctggtgagcgtggcgaccagcctccaaagcggtgccgtctgg
agcggcggtgtccttgatgccggcctgaaggccgccctggaagccggcttcagtgccagc
gccaccaatgtggctgcgccgggcagcaccggctggacctttgatgccagcaatctcaac
ctcgacttcctggcccaaggcgaaaccatcaccctgaccttcagggtgaccgtcagcgac
ggtcatggcggcagtgcctatgatgatgtcaccatcaccatcaccggcaccaacgatgcg
ccgaccatcagtgacatcgccgacttcggctttgttgaagcgctcgatgccagcaaccag
agcctccttgccaacggtaccgtcagcttcgatgacgtggataccaatgacctggtgagc
gtggcgaccagcctccaaagcggtgccgtctggagcggcggtgtccttgatgccggcctg
aaggccgccctggaagccggcttcagtgccagcgccaccaatgtggctgcgccgggcagc
accggctggacctttgacgccagcaatctcaacctcgacttcctggcccaaggcgaaacc
atcaccctgaccttcagggtgaccgtcagcgacggtcatggcggcagtgcctatgatgat
gtcaccatcaccatcaccggcaccaacgatgcgccgaccatcagtgacatcgccgacttc
ggctttgttgaagcgctcgatgccagcaaccagagcctccttgccaacggtaccgtcagc
ttcgatgacgtggataccaatgacctggtgagcgtggcgaccagcctccaaagcggtgcc
gtctggagcggcggtgtccttgatgccggcctgaaggccgccctggaagccggcttcagt
gccagcgccaccaatgtggctgcgccgggcagcaccggctggacctttgacgccagcaat
ctcaacctcgacttcctgggcgaaggcgaaaccatcaccctgaccttcagggtgaccgtc
agcgacggtcatggcggcagtgcctatgatgatgtcaccatcaccatcaccggcaccaac
gatgcgccgaccatcagtgacatcgccgacttcggctttgttgaagcgctcgatgccagc
aaccagagcctccttgccagcggtaccgtcagcttcgatgacgtggataccaatgacctg
gtgagcgtggcgaccagcctccaaagcggtgccgtctggagcggcggtgtccttgatgcc
ggcctgaaggccgccctggaagccggcttcagtgccagcgccaccaatgtggctgcgccg
ggcagcaccggctggacctttgacgccagcaatctcaacctcgacttcctgggcgaaggc
gaaaccatcaccctgaccttcagggtgaccgtcagcgacggtcatggcggcagtgcctat
gatgatgtcaccatcaccatcaccggcaccaacgatgcgccgaccatcagtgacatcgcc
gacttcggctttgttgaagcgctcgatgccagcaaccagagcctccttgccagcggtacc
gtcagcttcgatgacgtggataccaatgacctggtgagcgtggcgaccagcctccaaagc
ggtgccgtctggagcggcggtgtccttgatgccggcctgaaggccgccctggaagccggc
ttcagtgccagcgccaccaatgtggctgcgccgggcagcaccggctggacctttgatgcc
agcaacctcaacctcgacttcctggcccaaggcgaaaccatcaccctgaccttcagggta
accgtcagcgacggtcatggcggcagtgcctatgatgatgtcaccatcaccatcaccggc
accaacgatgcgccgaccatcagtgacatcgccgacttcggctttgttgaagcgctcgat
gccagcaaccagagcctccttgccagcggtaccgtcagcttcgatgacgtggataccaat
gacctggtgagcgtggcgaccagcctccaaagcggtgccgtctggagcggcggtgtcctt
gatgccggcctgaaggccgccctggaagccggcttcagtgccagcgtcaccaatgcggct
gcaccgggcagcaccggctggacctttgatgccagcaatctcgacctcgacttcctgggc
gaaggcgaaaccatcaccctgaccttcagggtgaccgtcagcgacggtcacggcggcagt
gcctatgatgatgtcaccatcaccatcaccggcaccaacgatgccgtagagggtgagttc
gccaaggaaatctgggtaccggcctccatggctgagttgctcaatccctatgacgatgga
tatccactgcatattgccgtacctacagacacagataccaatgatgtcatcagcattacc
aatatcagcatggcctttgtggatcagaatgtggtcgcagacataggtacgctttggtac
gttcccgatggagccgtagatttagtgccgtatgattttgacaacccggtcaacctgtcg
gccactgaattgggcactctggtttatatgccgggtgacaacggcgatttggacagtcag
ttggatatttcactcaccttcaccatcaattcgggtacagagcaggtactgggtgacttt
gttatccacacggtgccgcaaaatagccttggcgataacagtgtcctgatcggcgacggc
agttcgccactcacttcgggtaacgatcaggatgccttcttaaccgtcagcagtggtttc
gccgaagtacttaataccgatcccagtttgggtacgctggatctcttcaccgacttccag
aagtcacccttcgacattcccattcctggggatgaaattggtggtactaccggccaggaa
agggaagatgaagtctcggtcaggctcaccatcaatggcatcacctttattgtcattgcc
gctgcaaacggggtgacagactggacctttgatgtggattcaggcctgatgaaggccagt
gtggcctacgacagcatactgatggaatctgatctatcgaccactcttgcccaatacctg
gcagccaatccggtatccgcgggagacatttggaccatcacctatctggataatgatggt
ggctcctaccaggcacgctttgtacaagcgaccttcacccacgagttgttaccggatacc
gccattaccgtcacgggcacagacaatgtcgataacctgattttcggcaccactgaagga
gacatactgacaggggccaatctgaacgatgaaattgttggccgggaaggtaacgatatc
atcaaagggctgacaggtgacgacgagctgctgggcggcagcggaaacgacaccatagaa
ggcggcacaggtgccgattacctcatcggcggcttgggcagtgacagtctggatgcaggt
atagacacagaccgggatatcttggtgtgggatacaggttcagccgatggcagtaccgat
gatgtctatcatttcgaccccgatcatgatgctttggatttatcagatattctgctcaat
gaagaaaacggcagcctggaagattacttcagcttcagcttcggtggtggtgataccaca
atcaccatagacagcaacggtgccgatcccggaggggatacagtcacaatagttctgcat
ggcacggatctgtcggcaatctatggctcggccaacgaaaccgacattattcagggcttg
ctgggggataacgcccttctggtcactgaaccaccggccccccccatactgccggaacca
aaccatgtggtgattcgggacgagcacagcatcccctaa
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integrated database retrieval system
