Shewanella sedimentimangrovi: JYB85_17845
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Entry
JYB85_17845 CDS
T07846
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssem03000
]
JYB85_17845
Transcription factors [BR:
ssem03000
]
Prokaryotic type
Helix-turn-helix
Other families
JYB85_17845
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_30
PAS_4
HTH_Tnp_ISL3
HTH_23
AAA_3
PAS_8
Mg_chelatase
AAA_16
AAA_7
HTH_IclR
HTH_22
HTH_28
HTH_7
AAA_14
HTH_1
Motif
Other DBs
NCBI-ProteinID:
QSX37091
UniProt:
A0ABX7R1N3
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Position
complement(3994091..3995872)
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AA seq
593 aa
AA seq
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MKASLQPWLADSWRRSADAGLHENRPADGLRLTAADLDERLESRRQLVSLVEQHALPLFS
KLMAHSDSRLILSDSDGFVLRHWGLARYSDRLANVALDCGVNWLEEHKGTNAIGTALRAG
QALSVVGEQHYFRQHRFMSCSASPIFAPNGELIGALDITSERLRHTQQTLMLISSLAQQV
ETALLCSLPGGRFRVDLAASRQLLSSGWQGILIADDNGRLLGLNPMARQYLGRAQPGADL
AELLGEDWQRQSSQCPWGELHLATSALGDTPSKKIQGAKPVKFHDPKLEQAWQLARKVVS
RQIPLLIQGETGVGKEHFVRQLYSDSHRKGPLVAVNCAALPAELVESELFGYQAGAFTGA
ARQGYLGKIRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGSLQAVKVDIQVVAA
THMDLQSMVDEGRFRQDLYFRLNGLQVILPPLRQRSDRTRIIHKLHRKYRSQDQGICADL
LGWLESYAWPGNLRELDNLMQVVCLLAEDEPELQLQHVPEALLARLRQGRQHDTGQADGH
DCGQADGKLEQRMRQQILTTLAECNGNVSACARRLGISRNQIYRRLRQSCVKS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttcgctgcaaccctggctggcggattcctggcgccgcagcgccgacgcaggt
ctgcatgaaaatcgcccggccgatgggctgaggctgacggcggccgatctggatgaacgg
ctggaaagtcggcgccaattggtgagcctggtggaacagcatgccctgccgttgttttcc
aaattgatggcccacagcgacagtcgccttattctgtccgacagcgatggcttcgtgctc
aggcattggggactggcgcgttactcggatcgtttggccaatgtggccctggattgcggc
gtcaactggctggaggagcacaagggcaccaatgccataggcacggccctgagggcgggg
caggctttgtctgtggtgggcgagcaacattatttccgccaacaccgttttatgagctgt
tccgccagtcccatttttgcccccaacggtgagcttatcggcgccctcgacatcacttcc
gagcgactcagacacacccagcaaaccctgatgctgatctccagcctggcccagcaggtg
gagacggcgctgctgtgctccctgccgggcggacgtttccgggtggatctggcggcgagc
cggcagctgttgtcttccggctggcaggggatattgatcgccgatgacaacggccgtttg
ctgggactcaatcccatggcgcgccaatatctggggcgggcccaaccgggagcggatttg
gccgagctgctgggtgaggattggcagcggcagagcagccagtgcccttggggtgagctg
catctggccacctcggcccttggcgacacgccgagcaaaaaaatccagggcgccaagccg
gtcaagttccatgaccctaagctggagcaggcctggcaactggcccgcaaggtggtttca
aggcagatccccctgcttatccagggggaaaccggcgttggcaaggagcactttgtgcgc
cagctgtacagcgacagccaccgcaaggggccgctggtggcggtcaattgtgccgccctg
ccggcggagttggtggaatccgaactcttcggctaccaggctggcgccttcacaggcgcc
gcccgacagggttacctgggcaagatacgtcaggccgatggcggctttctgtttctggat
gaaataggcgagctgccgctggcggcacagggacgactgctgcgggtgttgcaggagcgg
gaggtgacccccgtgggcagtttgcaggcggtgaaagtggatattcaggttgtggccgcg
acccacatggatttgcagtccatggtggacgaagggcgtttccgtcaggatttgtatttc
aggctcaatggcttgcaggtgatcttgccgccgctgcgccaacgcagcgatcgcacccgg
attatccacaagctgcaccgcaagtatcgcagccaggatcagggcatctgcgccgactta
ctgggttggctggagtcctatgcctggccgggcaacctgagggaactggacaacctgatg
caggtcgtctgcctgctggccgaagatgaacccgagttgcagctgcaacatgtgcctgag
gccctgttggcccgtctgcggcaggggcgacaacatgacacaggccaggcggatggccat
gactgtggtcaggctgatggcaaacttgagcagcggatgcggcagcaaatcttaaccacc
ctggctgaatgtaacggtaatgtcagcgcctgcgcccgccgtttgggcatcagtcgtaat
cagatctatcgtcgtctgcgccagtcttgtgtgaagagctga
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