Solea senegalensis (Senegalese sole): 122758174
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Entry
122758174 CDS
T07721
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122758174 (rc3h2)
04121 Ubiquitin system [BR:
ssen04121
]
122758174 (rc3h2)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122758174 (rc3h2)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122758174 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
122758174
NCBI-ProteinID:
XP_043868076
LinkDB
All DBs
Position
LG21:11863274..11888856
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AA seq
1158 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQPVSLTCAAEVEHYEVCRLCVEELALYLKPISGAKGVAA
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNPDAPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSSSVGRAFPLAPGVMGKTFTMEGSIHTDVTV
GVGSGLKGTVENTTALAEGVPGLTHPQLISRGADMMEEMKRAVPNGSSGANGSNGTSGTN
RTTAASTEQKPISPPRTPISHSSASSPLTTVGQGDGGAPMPKHGQFMLRAPHHSQASELF
YQHSDYDTAHYPPTSGSYYPSTFHPPHKPCMARFLRSSNVPESSLPPSMGPPPTSYANDP
QTPHPPSSSSSSVYPPHPPRDRMGPSFHPHPGQPQYGPLAPAHGVYAPLYDSRRVWRPQL
YHREDARSNSLPPEVLHSYQPPLRERFNSLDSNYCSAAEHRAALHRDYGRVPLGYEDLFR
RKQEQWAHHHHHHHHNTTRPSQSSPIFTIDFGSEHLESSGGQCVGCRFRGEESLAHYSPW
SCGSIGPCLSPFESETLTHTSTHSCAEHSELDSNGGRGGGGGSGGVGSSSVGKRWLHSLD
HYRRMKDEDPIIPFSEGPIISKWGAISRASRTGYHTTDPVQATACQRSASTTPINFKDYN
PHLDHSDFRWSSRGSDSSSHSSFLESEQLCASELHGRRTSISGGEKAVSDLKAHQTTYIQ
DQDRVESQSDPDRDIELELCALDMEDSDHQEIKPQELLDLVTPQSQDSSRLLPPPCSSPL
LSSPVEEHPQTEGPLTEKMDAHLLKKMAFRKSLSPGGLVSGGLGVGKLVLRTGPPQLGDT
STRACPETHGTEMLLNGS
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggaccgagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcggccaccagcccatcagcctgggctgctcgcacacggtgtgtaagacc
tgcctccacaaactgcaccgcaaagcctgcccctttgatcagacgcccatcagcacagat
atcgacctgctgccggtcaactgcgccctcctacagctggttggagctcaggttccagat
gtgcagcctgtgagcctgacttgtgcagcagaggtggagcactatgaagtgtgcaggctg
tgtgtagaagagctggctctctacctaaaacctatcagtggagcaaaaggtgtggcggct
ctgagtcccagcgtgcttagtcggcctatgcaaaggaagctggtgactttggtgaactgc
cagctggtggaggaggagggccgtgtgcgggcggtgagggcaggccgctcgctgggggag
cgaactgtgaccgagctcattctgcagcatcagaacccgcagcagctctctgccaacctg
tgggcagcagtgagggcacgggggtgtcagttcctgggacctgctatgcaagaagatgcg
ctgaagctggttctactcgctctggaggacgggtcagctctctccaggaaggtgttggtt
ctgttcgtagtccagaagctggaagcccggttcccacaggcctccaaaaccagcataggc
catgtggtgcagctcctctacagggcctcctgcttcaaggtgactaagcgcgacgaggac
tcttcactgatgcagctgaaggaagagttccgtacatacgaggctctcaggagggaacac
gacgcccagatcgtccacatcgccatggaggcgggcctgcggatctcgccggagcagtgg
tcgtcgctgctgtacggcgacctggtccataagtcacacatgcagtccatcattgacaag
ttgcagtctccagagtcttttgcgaagagcgttcaggaactgacaatcgttctgcagagg
acgggagacccggccaacctcaccagcctcagaccgcacttagagctgctcgccaacatt
gaccacaatccagatgccccagcaccatcatgggaggagctggagagtgtgatgctggct
gtgaagctggtggtgcacggactggtggaattcatacagaacttcagcaagaagagccac
gacactccacagcctcaggccaacagcaagtataagacaagcatgtgccgagaccttcgt
caacagggcggctgtccccgaggaaccaactgcactttcgcacacacacaggatgagctg
gagaaatttagactgaggaacaagaagagcagcagcgtgggccgagcatttccgttggca
cccggggtgatgggtaaaacgttcaccatggagggcagcattcacacagatgtgacggtg
ggagtggggtcggggctcaaaggcacagtggagaatacaaccgccctggcagagggagtt
cctggcctgactcacccccagctcatctccagaggggcagacatgatggaggaaatgaag
agagctgtgccaaatggatccagcggggccaacgggtctaacgggacatctggcaccaac
cgaaccacagcggcgtccacagaacagaagcccatctctcctcccaggactcccatcagc
cactcctcagcatcatctcccctgaccacagttggacagggtgatggtggtgctcccatg
cccaaacatggtcagttcatgctgcgcgcaccgcatcattcgcaggcatcggagctgttc
tatcagcactctgactatgacacggcccattatccgccaacctcaggttcttattatcca
tccactttccaccctcctcacaaaccctgcatggctcgcttcctcagatcgtccaacgtc
ccagaatcctctctgccaccttccatgggcccgccaccgacttcctacgccaatgatcct
caaacaccacacccgccctcgtcctcttcctcctcagtgtacccaccacacccgcctcga
gatcgaatgggccctagcttccatccgcacccgggacagcctcagtacggacctctggca
ccagctcacggggtctatgctcctctgtatgacagcagaagagtatggaggcctcagctg
taccacagagaggatgccaggagtaactcactgcctccagaggtgctgcattcctaccag
cctccactcagggagagattcaactctctagacagcaactactgctctgcagcggagcac
cgtgcagcgctgcacagggattacggtcgtgttcctctaggctacgaggatctgttcagg
aggaagcaggaacagtgggcgcaccatcatcatcatcaccatcacaacaccaccagaccc
tcgcagtcctcccccatcttcaccattgattttggatccgagcatctggagagcagcgga
ggtcagtgtgtcggctgcaggttcagaggcgaggaaagcttagcgcactactccccgtgg
tcctgtggaagcatcggcccctgcctcagtccctttgagtccgaaacactcacgcatact
tctacccactcctgcgccgagcactcggagttggacagtaacggcggcagaggaggaggc
ggcggcagcggcggcgttggcagtagtagtgttgggaagcggtggctgcattcgctcgac
cactaccgccgcatgaaagacgaggatccgatcattcccttcagtgaggggcccattatc
tccaagtggggcgctatatccagggcgtcacgcacgggctaccacaccactgacccggtc
caagccactgcctgccagagaagtgccagcaccacacccatcaactttaaagattacaac
ccacacttggatcacagtgacttcaggtggagctccagaggatccgactcctccagtcac
tccagtttcctagagagtgagcagctttgtgcatcagagcttcacggccgtcgcacttcc
ataagcggcggagagaaagctgtctctgatctgaaagcccatcagaccacctacatccag
gatcaggatcgggtcgagagccaatccgacccagaccgagacattgagctcgagctgtgc
gctctggacatggaggattcagaccaccaggagatcaaacctcaggagcttttagacctg
gttactccacagtctcaggattcttcccgcctccttccacctccctgctcctcccccctc
ctctcatccccggtagaggagcatcctcaaacagagggccctttgacagagaagatggat
gctcatctgctgaaaaagatggctttcagaaagtccctgtcccctggaggcttggtctca
gggggtctgggcgtcggtaagctggtgctgcggactggaccgcctcaactgggggacact
tccacccgggcttgtccagagacccacggaacagagatgctgctcaatggaagctaa
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