Solea senegalensis (Senegalese sole): 122758182
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Entry
122758182 CDS
T07721
Symbol
tnpo1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122758182 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122758182 (tnpo1)
03009 Ribosome biogenesis [BR:
ssen03009
]
122758182 (tnpo1)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122758182 (tnpo1)
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
122758182 (tnpo1)
Pre-60S particles
122758182 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Vac14_Fab1_bd
IBN_N
Cnd1
TOR1L1_N
Arm
TPR_IPO5
HEAT_EF3_N
TPR_DNAAF5
PDS5
HEAT_MROH2B_C
Adaptin_N
HEAT_GCN1_C
Ltn1_1st
HEAT_Maestro
MMS19_C
Dopey_N
HEAT_DAAF5
TPR_TTI1_C
RTP1_C1
PIK3R4-like_middle
CandA_N
Motif
Other DBs
NCBI-GeneID:
122758182
NCBI-ProteinID:
XP_043868092
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All DBs
Position
LG21:4074789..4097960
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AA seq
890 aa
AA seq
DB search
MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQFPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGSFGALQKICEDSAEILDSDMLDRPLNVMIPKFL
QFFKHNSPKIRSHAIACVNQFIISRTQALMLHIDAFIENLFALATDEEPEVRKNVCRALV
MLLEVRLDRLLPHMHNIIEYMLLRTQDQDENVALEACEFWLTLAEQPVCKEVLCGHLSQL
TPVLVNGMKYSEIDIILLKGDIEEDEAIPDNEQDIRPRFHRSRTVAQQHEGDGIEEDEDD
DDELDDDDTISDWNLRKCSAAALDVLANVFRDDLLLHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLVLCLSDKKALVRSITCWTLSRYAHWVVSQPPDVYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAFILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNQLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLYQSQPDQYEAPDKDFMIVALDLLSGLAEGLGGTIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
LISVCNNATWAIGEIAVQMGPEMQPYIAMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCSSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCDAVA
SWVNPKEDLRDMFYKILHGFKNQVGEDNWRRFSDQFPLPLKERLATFYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtgagtggaagccagacgagcaaggactccagcagattttacagcttctgaaa
gagtctcagtctccagatacgtccacacagagatccgtccagcaaagactcgagcaactc
aaccagtttccagacttcaacaactatttaatatttgttttgacaaagttaaaatcagaa
gatgagccaacacggtccctgagtgggctgatactgaagaacaatgtgaaggcccactat
cagaacttccccaatggtgtgtctgatttcatcaagagcgagtgtctccagaacattgga
gactcttctccccttatccgggccactgtgggtatcctcatcaccacgattgcctccaaa
ggagaattacaaaactggccagagctcctgcctaagctctgcctgctgctggattctgag
gactacaacacgtgtgagggatcgtttggagccctgcagaagatctgtgaagactctgct
gagatcctggacagtgacatgctggaccgtcccctcaacgtcatgatccccaagttctta
cagttttttaagcacaacagtcctaagattaggtctcatgctatcgcctgcgtcaatcag
ttcatcatcagcaggactcaggccctgatgctgcacatcgacgctttcatcgagaacctg
tttgctctggcgacagatgaggaaccagaagtgaggaagaacgtgtgcagagctctggtc
atgctgctggaggttcgtctggaccggctcctgccacacatgcataacatcatcgagtac
atgctactgaggactcaggaccaagatgaaaacgttgccttggaagcctgtgagttctgg
ctaactctggccgagcagccggtgtgtaaggaagtgctgtgtggacacctctcccaactc
actccggtgcttgtcaacgggatgaagtactctgagattgacattattctgctcaagggc
gacattgaagaagacgaggcaattcctgacaacgagcaagacatccgtccgcgcttccat
cggtcacgcacagttgcccaacaacatgagggcgatgggattgaggaagacgaagatgac
gatgacgaactggatgatgatgatactatttctgactggaacttgcgcaagtgttcggcg
gcagcactggatgtgctggccaacgtcttcagggacgatctgttgctgcacattctgccc
ctcctcaaagagctgctcttccatccagagtgggtggttaaagagtccggcattctcgtg
ctgggagctatagctgaaggttgtatgcagggcatgatcccgtacctgcccgagctcatt
ccccacctcgtcctgtgtttatctgataagaaggccctggtgcgttcaatcacctgctgg
acactgagccgctacgcccactgggtggtcagccagcctccagacgtttacctgaagccc
ctaatgacggagttgctcaaacgtattctggacagcaacaagcgtgtgcaggaggctgct
tgcagtgcctttgccactttggaggaggaggcttgtacagagctggtgccctacctggca
ttcatcctcgacacgctggtgtttgctttcagcaagtaccagcacaagaacctgcttatt
ctttatgatgccattggaacgctggccgactcagtgggacaccatctgaataaaccggag
tacatccagatgttgatgccgccactgatccagaaatggaaccagctcaaagatgaagac
aaagaccttttccctctgttagaatgtttgtcgtcagtagccactgccctgcagagcggc
ttcctgccctactgtgagcctgtgtatcaacgctgtgtcaacctggtccagaaaaccctc
gctcaagccatgctttatcagtcacagcctgaccagtatgaagcccccgacaaagacttc
atgatcgtggctttggatcttctcagtggactcgctgagggtttgggaggaaccattgag
cagctggttgctcgtagcaacatcctcacactcatgtatcagtgcatgcaggacaaaatg
ccagaagtgcgccagagttcatttgctctgctgggagatctgaccaaggcttgtttccag
cacgtcaaaccatgcatcgctgattttatgcccatactgggtactaatttgaacccagag
ttaatatcagtgtgcaacaatgcgacatgggcaattggagagatagctgtacaaatgggg
cccgaaatgcagccgtacattgccatggtgctgcaccagctggtagagatcattaacaga
cccaatactccaaagactctgctggaaaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgctcctca
ctacgaaatataagagacaatgaggagaaagactctgcgttcagaggaatttgcactatg
atcagtgtaaatccaggaggtgtagtgcaggactttatattcttctgtgacgcagtggcc
tcctgggtaaatccaaaggaggatctcagagacatgttctataagatccttcacgggttt
aagaaccaggtgggagaggacaactggagacgattctcagaccagttcccgttgccactg
aaggagcggctggcaaccttttacggggtctaa
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