Solea senegalensis (Senegalese sole): 122758260
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Entry
122758260 CDS
T07721
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122758260 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122758260 (prpf4)
Spliceosome [BR:
ssen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122758260 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_Aladin
PRP4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_Vps41
eIF2A
Beta-prop_SPT8
WD40_like
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
122758260
NCBI-ProteinID:
XP_043868221
LinkDB
All DBs
Position
LG21:complement(17473094..17477572)
Genome browser
AA seq
508 aa
AA seq
DB search
MSDDEDGPPVVKRSRVYYGSLEEKERERLVTGGSMSSRSSAVKAGIDAGNINISSGETME
MEERVNERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLR
SVLSVVGPDALKKSRKDEERAKRSQEECQQTWYHEGPTSLKEARLWLAKYSLPRAVERLE
AARAQKEVAEATKAMRQQEQHKSLRSLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGL
CKLWSVPDCSLIRTLRGHNTNVGAIVFRPQAGVSLDHSDVSLASCATDGSVKLWNLESDE
PVADIEGHDERVSRVTWHPSGRFLGTTCYDKSWRLWDLEVQEEILHQEGHSKGVHDLHFH
PDGSLTATGGLDAFARVWDLRTGRCVVFLEGHLKEIYSVNFSPNGYHLATGSGDNTCKVW
DLRNRRCLYTIPAHQNLVSAVRFQPTDGHFLLSGAYDNTAKIWTHPGWTPLKTLAGHEGK
VMGVDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgaggacgggcctccggtcgtgaagaggagccgtgtttactatggaagc
ctggaagaaaaagagcgtgagcgcctggtcacagggggcagcatgtcatcaagaagtagc
gcggtgaaggcggggattgatgcagggaacatcaacatatcctcaggagagactatggag
atggaggagcgggtcaacgagcgtcagcaggaggcgcttgctgcgtttgagcggcggcgg
cgagcacgacaaatcacggtctccactgacgacgccgaggtcaaggcaggcctccgtgcc
cttggcgaaccaatcacattgttcggagagggaccagctgatcgtcgagagaggctgcga
agtgtcctctctgtggtcggtccagatgctctgaaaaagtccaggaaagacgaagaacga
gccaagaggtcacaggaagagtgccagcaaacatggtaccacgaaggccccacctccctg
aaggaagctcgcctctggttggccaaatactctctgccacgggcagtggagcgtctggag
gctgcacgtgctcagaaggaggttgccgaggcaaccaaggcgatgcggcaacaagagcag
cacaagagcctgaggagtctgaacaacttctgcagtcagatcggagatgaccgaccaatc
agcttctgccacttcagccctgactccaaaatgctggccacagcttcctggagtggtctg
tgtaagctgtggtccgtccccgactgcagtctgatccgtacactcagaggacacaacacc
aacgtcggtgccatcgtcttccgtcctcaggccggagtctctctggaccactcggacgtc
agcctggcgtcgtgtgcaactgatgggtcagtgaaactgtggaacctggagagtgacgag
ccggtggctgacattgagggtcacgatgagcgcgtgtcacgggtaacctggcatccatct
ggaaggttcctgggaacaacctgttatgataaatcgtggcgtctgtgggacctcgaggtt
caggaggaaattctacatcaggaaggtcacagcaaaggagtccacgacctgcacttccac
ccagacggttcactgacagctactggaggcctggatgcatttgctcgtgtttgggatctt
cgaactggacgctgtgtcgttttccttgagggacatttgaaggagatttacagcgtgaac
ttctctcccaacgggtatcacttggcaacaggaagtggtgacaacacctgtaaggtttgg
gacttgagaaacaggaggtgtctgtacacaattcccgcccaccagaacctggtgtctgct
gtccgctttcaacccactgacggtcacttcctgttatccggggcttacgacaacacggcc
aaaatctggactcaccctgggtggacgcctctgaagactctcgctggacatgaggggaag
gtgatgggcgtcgacgtgtcacccgacgggaaactgattgcaaccagttcgtacgaccga
accttcaaactgtggctgtctgagtga
DBGET
integrated database retrieval system
