Solea senegalensis (Senegalese sole): 122758410
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Entry
122758410 CDS
T07721
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122758410 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122758410 (mtrex)
03041 Spliceosome [BR:
ssen03041
]
122758410 (mtrex)
03009 Ribosome biogenesis [BR:
ssen03009
]
122758410 (mtrex)
03016 Transfer RNA biogenesis [BR:
ssen03016
]
122758410 (mtrex)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122758410 (mtrex)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122758410 (mtrex)
Spliceosome [BR:
ssen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122758410 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
122758410 (mtrex)
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-60S particles
Helicases
122758410 (mtrex)
Transfer RNA biogenesis [BR:
ssen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122758410 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
122758410
NCBI-ProteinID:
XP_043868516
LinkDB
All DBs
Position
LG21:8287822..8309773
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKILPPVPPETGKAISKNGSDKDAGPSARLKREVDSDG
GEEVVFEKKPRLETALANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKSRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQTCHVVYTD
YRPTPLQHYVFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSSGGGKWDPRGR
KGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKRLVEEVF
SNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHAIEIPNEESVVNYFKIRQQLAKLGKEIQEFINKPKNCLPFLQPGRLVKVKN
EDLDFGWGVVVNFCKKSNVKSVADSDPLYVVEVLLHCNKDSVKDAATEAAKPAAPGETGE
MQVVPVMLHLVTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGI
KDPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTV
LQMDQLKCRKRVLRRLGFASPSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQA
TALLSCFVFQENASEMPKLTEQLAAPLRRMQECAKRIAKVSADAKLEVDEETYLNQFKPH
LMDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggagatggcttgttcagcgtgtttgatgatgaacaacaaactacc
acgagcaaaaagattctccccccagtgcccccagaaacagggaaagctataagtaaaaat
ggctctgacaaggatgctggtccctctgcacggctcaagagggaggtggacagtgacggc
ggagaggaagtggtgtttgagaagaaacctcgacttgagacagccttggctaatgaccta
aatcttgcagaattcatgccacaagtgaaggtggagcaagttgaaactgtggaaggatgc
tcacatgaggtggctttacctgccagtgatgaatataaacctctgaaatccagagtggga
aaagcagccaaggagtacccttttgttcttgacccgttccagcgtgaggccatcttatgt
attgacaacaatgagtctgtgcttgtgtctgcacacacatctgcaggcaagactgtctgt
gctgaatatgccatagctctagccctcagagagaagcagagagtgatcttcacaagcccc
atcaaggcactttcaaaccagaaatacagagagatgtacgaagagtttcaggatgtgggt
ctgatgactggtgacgtcaccatcaaccccactgcctcttgcctcatcatgacaacagag
atcctgaggagcatgttgtacagaggctctgagataatgagggaagtggcgtgggtcgtc
tttgacgagatccattacatgagagatgcagagcgtggtgtcgtgtgggaggagaccatc
attcttcttcctgacaacgtgcattatgtcttcttgtcagccaccattcccaatgctaga
cagtttgctgagtggatttgtcacctgcataaacagacatgccatgttgtgtacacagac
tatcgtcccactcctctgcaacactacgtcttcccagcagggggcgatggtctccacctg
gtggttgatgagaacggagacttcagagaggacaatttcaacacggctatgcaggtgttg
agagatgcaggcgattctgggggcagcagtggaggtggcaaatgggaccccagaggacgc
aaaggaggcactaaaggcccatccagtgtgttcaaaattgtgaagatgatcatggagagg
aatttccagcctgttatcattttcagcttcagcaagaaagaatgtgaggcctatgcactg
caggtggccaaactggactttaacacagatgacgagaaacgtctggtggaggaggtgttc
agcaacgcagtcgactgtctttcagatgaggacaagaaactccctcaggtagagcatgtg
ctgccgctgctgaagaggggaataggtatccatcacggaggcctgctacccatcctgaag
gagacgatcgagatccttttctccgaaggcctcctcaaggccctgttcgccacagagacg
tttgccatgggcatcaatatgcccgcccgcactgtgctcttcaccagcgcacgcaagttt
gatggcaagagtcatcgctttattacatcaggtgagtacatccagatgtctggacgtgct
ggaaggagaggaatggacgacagaggaatcgttattttcatggtggatgagaagatgagt
ccggctgtgggcaaacagctcctcaagggatcagctgacccgttgaacagtgccttccat
ctgacctacaacatggtgctgaacctgctgcgtgtggaggagatcaaccctgagtacatg
ctggagaaatccttctaccagttccaacactatagagctttgcctggtgttgtggagaaa
ataaagaagctggaggagcagtatcatgccatcgagatacctaacgaggaaagtgttgtc
aattactttaaaatcagacagcagctggctaaactgggcaaagagatacaggagttcatc
aataaacccaaaaactgcctgcccttcttgcagcctgggcgacttgtcaaggtaaaaaat
gaggaccttgactttggctggggagttgtcgttaacttttgcaagaagtctaacgtgaag
agcgttgcagactcggatccgctgtatgtggtggaggtcttgctccactgtaataaggac
agtgtaaaagatgctgcgactgaggctgctaaacctgctgcaccaggagagactggagag
atgcaggtggttcctgtgatgcttcatcttgtgacttccatcagctcggttcgactttac
atccccaaagatctaaggccctttgacaacaggcagctcatgctcaaatccatacaggag
gtgcagaagcgattcccagatggagttcctctgcttgaccccatagatgacatgggcatc
aaagaccctgcactgaagaaagtcattcagaaagtggaggcctttgagcaccgcatgtac
tcccaccctctgcacagtgaccccaacttggagtctgtatattctctgtgtgagaagaaa
gctctgattgcagcagatgttcgaacagcgaagagggagctgaagaaagcacggaccgtc
ctacagatggaccagctcaagtgcagaaagagagtcctgcgacgcctgggcttcgccagc
ccctctgatgtgattgaggtgaaggggcgagttgcgtgtgaaattagcagtgcggacgag
ctcctgttgacggagatggtgttcaatggtctcttcaacgatttgacagcggaacaagcc
acggccctgctgtcctgctttgtcttccaggaaaatgccagtgagatgcccaaactaact
gaacagttggctgcacctctgagacggatgcaggagtgtgcaaagcgcatagccaaggtg
tcggccgatgccaagctggaggtggatgaagagacttatctaaaccagttcaagccccat
ctgatggacgtggtcttcgcctgggcgaacggcgccacgtttgctcaaatctgcaagatg
actgacgtctttgaagggagcatcatccgctgtatgcggcgtctggaggaagtgctgaga
cagatgtgttctgcagccaaggccatcggcaacacagaactggaaaacaagtttgctgaa
ggaataacgaagatcaagagagacattgtttttgccgccagtctctacctataa
DBGET
integrated database retrieval system
