Solea senegalensis (Senegalese sole): 122758804
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Entry
122758804 CDS
T07721
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122758804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122758804
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122758804
Spliceosome [BR:
ssen03041
]
Complex C
Other components
Step II factors
122758804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
Flavi_DEAD
AAA_19
nSTAND3
ABC_tran
T2SSE
AAA_16
TsaE
PhoH
AAA_7
Sigma54_activ_2
AAA_30
AAA_33
Motif
Other DBs
NCBI-GeneID:
122758804
NCBI-ProteinID:
XP_043869059
LinkDB
All DBs
Position
LG18 :complement(6615478..6623672)
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AA seq
1179 aa
AA seq
DB search
MSVLDEIKRLEYLSLVSKVCTELENHLGISEKDLAEFIISLAEKHPTFDEFKAVLLGNGA
DFTDTLIGNLLRLINTMRSIPSTSKALQPEDNPKSNKEKLKTKYPALCKPDDPVWMIPPP
NTVKDDEEVAAAAMKQLEMLMPNVCETSSDNSRGRDADREGESKRPRSRSRERAEETNHK
RKRKRASRWSDRPPSPDRDNDDSNRKEDEEHWREKPVDRPLPDEPVVGDIYNGKISSLMQ
FGCFVQLEGLRKRWEGLVHISELRKEGRIANVADVVTKGQKVKVKVLLFTGSKTSLSMKD
VDQVTGEDLNPNRRKNLESGGRDEIMRNPDRPAEVSVLELEDNPTEHKRLTKITDLEKWE
IKQMIAANVLPKEEFPEFDEETGILPKVDDEEDEDVEIDLVEEEPPFLQGQTKWTLNLSP
VKIVKNPDGSLSQAAMMQSALSKERREVKQAVRAAEMDSIPTGLHKNWIDPMPDYEGRQI
AANMRGIGAMPVDLPAWKRYALGGNQVSYGKKTELSILQQRESLPIFKLKEQLVQAVHDN
QILIVVGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEYGCRLGQE
VGYTIRFEDCTCTETVIKYMTHGMLQRECLIDPDMSQYCIVMLDEAHERTIHTDVLFGLL
KKTIQKRKDMKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEILYTKEPETDYLDASL
ITVMQIHLTEPPGDVLVFLTGQEEIDTACEMLFERMKSLGPDVPELIILPVYSALPSEMQ
TRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQIVYNSKSGIDQLLVTPISQ
AQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLVSNVPEIQRTNLSSTVLSLKAMGINDLL
SFDFMDSPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVHLAC
SEEMLTIVSMLSVQNIFYRPKDKQAQADQRKTKFFQPEGDHLTLLAVYNSWKNNKFSNPW
CFENFIQARSLKRSQDIRKQMMSIMDRHMLDVVSCGKNTVRVQKAICSGFFRNAARKHPQ
DGYRTVIDQQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREVTIIDPRWLVEFAPAFF
RVADPTRLSRHKRQQKLEPLYNRYEEPNAWRISRAFRRR
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcttagacgaaattaaacgtcttgaatatttatctttggtgtcaaaggtgtgt
acagagttggagaatcacctgggaataagcgaaaaggatttggctgaatttatcatcagt
ctcgccgaaaaacatccaacgtttgatgaatttaaagctgtcctgttgggaaatggagca
gacttcacagacacccttattggtaatttacttagacttatcaataccatgcgatccata
ccatccacaagtaaagcacttcagccagaggacaacccaaagagtaataaggagaagtta
aaaaccaaataccctgctttatgtaaaccggatgatcccgtgtggatgatcccacctcct
aacacagtcaaagatgacgaggaggttgcggcagcagcgatgaagcagttggagatgctt
atgcctaatgtttgtgaaacaagctctgataacagcagaggtcgagatgcagacagagaa
ggtgaaagtaagcgacctcgctcaagatcaagagagcgtgctgaagaaacaaaccacaaa
cggaaaaggaaacgagcgtctcgctggagcgaccgtccgccaagtccagacagagacaat
gacgacagcaacaggaaggaggacgaggaacactggcgtgagaaacctgtggatcggcct
ctgccagatgagcctgttgtgggtgatatctacaacggcaaaatcagcagcctaatgcag
ttcggttgttttgtccagctagaaggcctcagaaaacgctgggagggtctggtgcacatc
tcagagctgcgcaaagaaggacgtatagcaaatgtggctgatgtggtaaccaaaggccaa
aaggtgaaggtcaaagttctgttgttcacaggaagcaaaaccagcctcagtatgaaggat
gttgaccaagtgacgggggaagacctgaaccccaatcgaagaaagaacctggagagtgga
ggaagagatgaaatcatgaggaatcctgaccgccccgctgaagttagcgtgcttgaacta
gaagacaacccaacggaacacaagcggctcaccaagataaccgatctcgaaaaatgggaa
attaaacagatgattgcagccaatgtacttcctaaagaagagttcccagaatttgacgag
gagacgggaatccttcctaaagtagatgatgaggaagatgaagatgtagagattgatctg
gttgaagaggagcctccgtttctccagggacagactaaatggactttgaacttgagcccg
gtcaaaatagtgaagaatccagatggctccctttcccaggcagccatgatgcagagtgct
ctgtctaaggagaggcgagaggtgaagcaggcagtccgtgcagcggagatggactccatc
ccgactggtcttcacaaaaactggatagacccaatgcctgattatgaaggaaggcagatt
gctgccaacatgagaggcattggtgctatgcctgttgatctcccagcgtggaaaagatac
gctttaggagggaaccaggtatcttatggcaagaagacggaactgtccatcctgcagcag
agggagagcctgcctattttcaagcttaaggaacagctcgttcaggctgtccatgataat
cagatcttgattgtagttggagaaactggatccggtaagaccacacagatcactcagtac
ctggcagaggcaggctacacctcccgtgggaagattggttgtactcagccccgtcgtgtg
gctgccatgtcggtggccaagagagtctctgaggaatacggttgccgtctaggacaagag
gtgggatacaccattcgctttgaggactgcacctgtacagagacagtaatcaagtacatg
acccacggtatgctgcagagagagtgtctgatcgacccagacatgagtcagtattgcatc
gtcatgctggacgaggcccacgagaggacaatccacactgacgtgttattcggcctgctc
aagaagacaatacagaaacgcaaagacatgaagttgattgtgtcctctgctacgctggac
gccgtcaaattctcccagtatttctttgaagctcccatcttcaccataccaggaagaacc
ttccctgtggagattctgtacactaaagaacctgagacagattacctggatgccagtctc
atcaccgtcatgcagatccatttaaccgagcccccaggtgacgtcctggtgtttctgacg
ggacaggaagagatcgacacagcctgtgagatgctgtttgaacgaatgaagtcgctgggg
cctgatgttcccgagctgattattctgcccgtttattctgccttgcccagtgagatgcag
accaggatttttgatcctgcgcccccaggcagcagaaaggtcatcattgccacaaatatt
gccgagacgtctctgactattgatggaatctactacgtggtggaccctggttttgtcaag
cagattgtgtataattctaaaagtggcattgaccagcttctggtgactcctatatcacag
gctcaggccaagcagaggtcgggtcgagctggcagaaccggcccgggaaagtgttacaga
ctctacaccgagagggcttacagagatgagatgcttgtgtccaatgtacctgagatccag
agaaccaacttgtccagcacggtgctctctctgaaggccatgggcatcaatgacctcctg
tcctttgacttcatggattctcctcccatggagactctgatcacagccatggagcagctt
tacactctgggagctctagatgatgagggcttactcacaaggctgggtagaaggatggct
gagtttcctctggacccgatgctgtgcaagatgttgatcatgtccgtccacctggcctgc
agtgaagagatgctcaccattgtctccatgctgtctgttcagaacatcttttatagacca
aaggacaaacaggcccaggccgaccagagaaagacaaagttctttcagcccgagggagac
cacctcactctgctggctgtgtacaactcctggaagaacaacaagttctctaacccctgg
tgctttgagaactttatccaggctcgctcactaaagaggtctcaggatatccgtaagcag
atgatgagcatcatggacaggcacatgttggatgtggtgtcttgtgggaaaaatacagtg
cgggtccaaaaagctatttgcagcggtttcttccggaacgcagccaggaaacaccctcag
gatggttatcgtaccgtgattgaccagcaggtggtgtatctccacccctctagcactctg
ttcaaccgccagcctgaatggctcgtgtaccacgagttggtgctgaccaccaaagagtac
atgcgggaggtgaccatcatcgacccccgctggctggtcgagtttgcccccgcgttcttc
agagttgccgatcccacgcgcctcagtcgacacaagaggcagcagaagctggagccgctc
tacaaccgctacgaagaacccaacgcgtggagaatctctcgtgccttcaggcgacgctga
DBGET
integrated database retrieval system
