Solea senegalensis (Senegalese sole): 122759633
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Entry
122759633 CDS
T07721
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122759633 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122759633 (msh2)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122759633 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
122759633
NCBI-ProteinID:
XP_043870526
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Position
LG18 :10453490..10491377
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AA seq
934 aa
AA seq
DB search
MAVQPKQNLSMDSAAESGFLNFIFSMPEKPDTTFRVFDRNDYYTVHGKDATFAAKEVFKT
NAVIKQLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNHGKSSKDHDWRIEFKA
SPGNLTQFEEILFGGGTGAESCAGVVAVRATTAGDGQRMVGVGYVDAAQRSMGVCEFPDN
EIFSNLESLLVQLGPKECLLAQGEGSADSKLRQVVERGGLLVSDRKRAEFSSKDMVQDLN
RLLRSKKGETAASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMRL
DNAAVRALNLFQASPDESSRAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKPKIEERLDL
VESFVCDSELRHTCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVNQIPALITALE
SYSGSYQVLLEAAFISPLRDLQADFTKYQEMIETTLDMNQIDHHEYLVKASFDAVLSELR
EKMDELDKSMQAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKAEKGLRNNKKFTML
DVQKNGVRFTNSKLSSLNEEYIKSREEYEEAQNAIVKEIITIASGYVDPLQSLSGVIAHL
DAVASFAVASVSAPVPYVRPRLLNDGCRRVELLQARHPCMENDPDTSFIPNDISFTQGEK
NFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVFDSILARVGAGDSQLKGV
STFMSEMLEIAAILRSATETSLIIIDELGRGTSTYDGFGLAWAISEHIASKISCFCLFAT
HFHELTALAAQESTVHNLHVTALTSHDTLTMLYRVKAGVCDQSFGIHVAELASFPPWVVA
VAKEKAEELEEFQEPAGEKSSQEEEPEAKRRRTDKQMGEDLIQDFLDKAKSLPAASMTEE
EVKAALRRMKQELENKNNTYISDIIARCRPLNSA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcaaaacctttccatggacagtgcagccgagagtggcttctta
aacttcatcttctccatgccggagaaaccagacaccactttcagagtattcgaccgcaac
gactactacactgtccacggcaaagacgccacatttgcggcgaaggaagtgttcaagact
aatgccgtcatcaaacagttgggctcagggagtcgcaagctggagagtgtcgtcctgagc
aagctgaactttgaggcttttgttaaagacttgctgctggtgaggcagtacagagttgag
gtgtacaggaaccatggcaagagtagcaaggatcatgattggaggattgagttcaaggcc
tccccaggaaacctaactcagtttgaggagattctgtttggtgggggaactggagcagag
agctgtgcaggagttgtcgctgtgcgtgccactacagcaggtgatggacagcgcatggtc
ggtgtcggctacgtcgacgcagcacagaggtcgatgggagtgtgtgagtttccagacaat
gagatcttctccaacctggagtccctgctcgtccaactcggccccaaagagtgtctcttg
gctcagggtgaaggcagcgctgacagtaaactacgacaggtggtggagcgcggcggcctg
ctggtctctgacaggaagagggcagagttcagtagcaaggacatggtgcaggatctcaac
cggctgttgagatccaagaaaggagagactgctgccagcaacacactaccagagctggac
aaacaggtggctatgtcatgcttggccgctgtcgtgcgcttcctcgaactgctctctgac
gagtccaacttcaactccttcagcctgacgacgctggacctgggtcagtacatgaggctg
gacaacgccgcagtgagggcccttaacctcttccaggcttctcctgatgagagcagcaga
gcacattcgttggctggtctgttgaacaagtgccgtacaccccagggtcagcggctggtc
aaccagtggatcaaacaacccctcatggacaaacccaaaatagaggagaggctggacctt
gtcgagagctttgtgtgtgactcggagctcaggcacacctgtcaggaggacctgctgcgg
cggtttcctgatcttcaccgcctggccaagaagttccaccgtcacagtgcaacactgcag
gactgttaccgcgtctaccaggccgtgaaccagatccctgccctcatcacggctttagag
agctactcgggcagctaccaggttctgttggaggcagcgttcatttcccctctcagagac
ctgcaggctgatttcaccaagtaccaggaaatgattgaaaccactctggacatgaaccag
attgaccaccacgaatacctggtgaaggcttcgtttgatgccgtgctgagtgagcttaga
gaaaagatggatgagctggacaagagtatgcaggcggtgctgaacagtgcagccagagag
ctaggtctagatgctggtaaaacggtgaagttggagtcgaacgccatgctgggtttttat
ctgagagtcacctgcaaggcagagaaaggtctgaggaacaacaagaaattcaccatgctg
gacgttcagaagaacggagtgcgtttcacaaacagtaaactgagttcactgaacgaggag
tacatcaagagcagggaggagtatgaggaggcccagaacgccatcgttaaagagatcatc
accattgcctcaggttacgtggaccccctacagtcgctgagcggtgtgatagcgcacctg
gacgcggtggcgagttttgccgtcgcgtccgtctcggctcctgtgccgtacgtccggcct
cgcctcttgaatgacggctgcaggcgcgtggagctgctgcaggccagacatccctgcatg
gagaatgacccagacaccagcttcatacccaacgacatcagcttcacccagggagagaag
aacttctatatcataacgggaccaaatatgggcggcaagtcgacatttatccggcaggtg
ggtgtgatcgcgctgatggctcagattggctgctttgtgccgtgcgagaaggcggagctt
agtgtgtttgacagcatcctggccagggtgggagccggggacagtcagttgaaaggcgtg
tccaccttcatgtcagagatgttggaaatcgccgccattctacgctcggccacggagacg
tcgctgatcataatcgacgagctcggcagaggcacgtccacatacgatggcttcggtctg
gcctgggccatcagtgaacacatcgcctccaagatcagctgcttctgcctttttgccacg
cacttccacgagctgactgcactggcagcacaggagtccacggtccacaacctgcacgtc
acggccctgacctcccatgacacgctgaccatgctgtacagagtcaaagcaggagtgtgt
gaccagagttttggtattcacgttgctgaattggcttctttcccaccatgggtggttgcc
gtggcaaaggagaaggcagaggagctggaggagttccaggaaccagcaggggagaagtca
tcgcaggaggaagagcctgaagccaagagacggcgaactgacaaacaaatgggagaagac
ctgatccaggacttcctggacaaagccaagtcacttcctgctgcgagtatgactgaggag
gaggtgaaggcagcgctcaggagaatgaagcaggagcttgaaaacaaaaacaacacgtac
atctcagacatcattgctcgctgtcgtcctttaaattcagcctga
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