Solea senegalensis (Senegalese sole): 122759882
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Entry
122759882 CDS
T07721
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122759882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122759882
03036 Chromosome and associated proteins [BR:
ssen03036
]
122759882
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122759882
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122759882
mRNA degradation factors
5'-3' decay
Decapping complex
122759882
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122759882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122759882
NCBI-ProteinID:
XP_043870801
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MATARTANPAPMIGLNKAANGQLRGQSKAAGQPGFLTTAQHFGAPQKMSSIPQNSGGIKF
GDDWKKCLELPPKDTRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQIS
KHLGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGIAKVDKTQMMVMDEAD
KLLSQDFVVLIEDIISFLPKNRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLKGI
TQYYAYVSERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMM
QEYRNRVFHDFRNGMCRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRIGRSGRFG
HLGLAINLITSEDRFNLKTIEDQLITDIKPIPGSIDKSLYVAEFHSVDPDDDGGDTEAKI
KDLGAP
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccagcaccaatgattggattgaacaaagcagcaaat
ggacagctcagagggcagagcaaggctgcaggacaaccaggattccttacaactgcccaa
cacttcggtgccccacagaaaatgagcagcattcctcagaacagtgggggcatcaagttt
ggggatgactggaagaagtgcctggagcttcctccaaaagacaccaggatgaggacttcg
gatgtgacatcaactaaaggaaatgagtttgaagactactgcctaaagcgggagcttcta
atgggaatctttgaaatgggatgggagaaaccgtcccctatccaggaggaaagcatcccc
attgcactatcaggcagggatattttggctcgagcaaagaatggcacaggaaaaagtgga
gcctacctcattcctctgctggagaggatcgatctgaaaaaggatcacatccaggccatg
gtaatggttccgaccagagagttggccctgcaggtgagccaaatcagcattcaaatcagc
aagcaccttggagtcaaggtcatggccaccactggtggcaccaacttgagagatgacatc
atgcgtcttgatgagatagtgcatgtagtgattgctacaccaggcaggattctggacctg
ataaagaagggtatcgcaaaggtggacaagacccaaatgatggtgatggatgaggcagat
aagctgctgtcccaggacttcgttgtcctgattgaagatatcatcagcttcctgccaaag
aatcgtcagatcctgctttactctgccacattccccatcagtgtgcaaaaattcatgagt
aaacacctgcagaagccgtatgagatcaacctgatggaggaactgaccttgaagggcatc
acccagtactacgcctatgtgtctgagagacaaaaggtccactgtctcaacacactgttt
tccaggcttcagatcaaccagtccatcatcttctgtaactccacccaaagagttgagctt
ctggctaagaaaatcacacagctgggctactcgtgcttctacatacacgcaaaaatgatg
caggagtacaggaaccgcgtcttccacgacttcaggaacggaatgtgcagaaacctggtc
tgcacagacctcttcactcggggaattgacatccaggcagtgaacgtggtcatcaatttc
gactttcccaaaagtgcagagacttacctgcaccgcattggccgatcagggcgtttcggt
cacctgggcctggccatcaacttgataacatcggaggaccgcttcaacctaaaaacaatc
gaggatcaactgatcactgacataaaacccatcccaggcagcatcgataagagcctgtac
gtggccgagtttcactctgttgatccggacgatgatggaggagacaccgaagccaaaatc
aaggatctgggagcaccttga
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