Solea senegalensis (Senegalese sole): 122760213
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Entry
122760213 CDS
T07721
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122760213 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122760213 (ddx5)
03009 Ribosome biogenesis [BR:
ssen03009
]
122760213 (ddx5)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122760213 (ddx5)
Spliceosome [BR:
ssen03041
]
Complex A
U1 snRNP components
U1 related factors
122760213 (ddx5)
Complex B
122760213 (ddx5)
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-60S particles
Helicases
122760213 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122760213
NCBI-ProteinID:
XP_043871240
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGNRGGGGGGGGGGKFGNPGERLRKKHWNLDELPKF
EKNFYQPHPDVVRRSPQEVEQYRRAKTITFKGRECPNPIIKFHEASFPSYVMEVIEKQNW
TDPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPITLVLA
PTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAADLIAVLREANQAINPKLLQM
AEDRGGRSRGGRGGDYRDDRRDRYSSGRRDFGNFRDRENGRGFENGPNKSFGTNTQNGGY
GNNAASSNGYNGSSYNGNGQSNFNQTGAFGGQNNFQAQNGASHTPFTFPQTQAPQQHPPP
LVPYTLPPQFTQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggcagggatagagatagaggttatggcggtggt
cctcctcgcttcgggggcaatcgtggtggtggtggtggaggcggcggtggaggaaagttt
ggcaatccgggagaacggctgcgcaaaaaacactggaacctggacgaactccccaagttt
gagaaaaacttctatcagccgcaccccgatgtggtccgcaggtcaccgcaagaagtggag
caatacaggagggccaaaacaattacattcaaggggagagagtgccccaaccccattatc
aagttccacgaggccagcttcccatcttatgtgatggaagttatcgaaaaacagaactgg
actgatccaacccccatccaggctcaggggtggcccctggctcttagtggcaaggatatg
gttggcattgcacagactggttctggcaaaacactgtcttatctgttgcctgccattgtg
cacatcaaccaccagcctttcctggaacgtggagatggtcctattaccttggtgctggcc
ccaacccgtgagttggctcagcaggtacaacaggtggctgcagagtatggcagagcttct
cgcctgaagactacctgtatctatggcggagcaccaaagggaccacagatacgtgacctg
gaaagaggtgtggagatctgcattgccactcctggcaggctcattgatttccttgaggcc
ggaaagacaaacctgcgtcgatgcacatatcttgtactggatgaggccgacagaatgctg
gacatgggctttgagccgcagatccgtaaaattgtcgaccaaatcagacctgaccgccag
actctgatgtggagtgctacttggcctaaagaggttcgccagttggcagaggacttcctt
aaggactatgttcagattaatattggagcactgcagctaagtgccaaccacaacatcctg
cagatcgttgatgtctgcaatgatggagagaaggaaaataaactgattcgcctgcttgag
gaaatcatgagtgagaaggaaaacaagaccatcatctttgtggagacaaagaggcggtgt
gatgatctcacaaggaggatgaggagggatgggtggccagcaatgggaatccatggggat
aaaagccaacaggaaagagactgggttctcaatgagttcaaatatggaaaggcccccatt
ctcatagctacagatgtcgcctccaggggtctagatgttgaagacgtgaaatttgtcatc
aactttgactacccaaacaactcagaggactatatccaccgcattggccgaacagctcgt
agccaaaagacaggcacagcttataccttcttcactccaaacaacatgagacaggccgcc
gacctcatagctgtgcttcgtgaggccaaccaggcaatcaaccccaagctcctccaaatg
gctgaagacagaggaggtcgttcaaggggaggccgaggtggtgattacagggatgaccgc
agggataggtattcctctggaagacgcgattttggaaattttagggacagggagaatggc
agaggttttgaaaatggaccaaacaaatcttttggcacaaacacacagaatggaggctat
gggaacaatgccgccagcagcaatggctacaatggatcgagctacaatggtaatggacag
tccaacttcaaccaaacaggggcctttggcggtcagaacaacttccaggcacagaatggt
gctagccacacccctttcaccttcccccagacacaggccccacagcagcatcctccaccg
ctggtgccctacaccctccccccacagttcactcagtaa
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