Solea senegalensis (Senegalese sole): 122760715
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Entry
122760715 CDS
T07721
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122760715 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122760715 (xab2)
03041 Spliceosome [BR:
ssen03041
]
122760715 (xab2)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122760715 (xab2)
Spliceosome [BR:
ssen03041
]
Complex B
Other components
Prp19-related factors
122760715 (xab2)
Complex C
122760715 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_16
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
122760715
NCBI-ProteinID:
XP_043871809
LinkDB
All DBs
Position
Unknown
AA seq
851 aa
AA seq
DB search
MPPLNGKGDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNIIYERALRELP
GSYKLWYSYLRERRKQVKGKCITDPGFEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVQNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEIGQDEDEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGETELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETVERHHMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATSSATGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAER
DKPKPKEKILFVRSDTSRSELAQLSKQANPDEIDIDDDDDDEDDNKDQGPEEVQLEQKSV
PTAVFGGLKDD
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgcctccattaaacggaaaaggcgatgttatgtttgaagaagatgatctaccctatgaa
gaggagatcattcggaacccatactcagtcaagtgctggatgcgatacattgaattcaaa
cagaatggagccaaatccaccctgaacataatatatgaacgggctctgagagaactgcct
ggcagttacaagctgtggtacagttatctgagagagaggcggaaacaagtcaaagggaaa
tgcatcactgatccaggctttgaagaggtcaataattgccatgaaagggcattggtgttc
atgcataagatgcctagaatatggctcgattactgccagttccttgtgtctcagtgcaag
atcacacgaagccggcggacatttgaccgtgcacttagagctcttcctgttacacagcat
ccacgcatctggcctctttatctccgctttgtccaaaacctgcccctacccgaaactgcc
atccgggtgtatcgcaggtatctcaagctttctccagagaatgcagaggaatacattgac
tacttacgatctgttggccgtttggatgaagcagctgtccgactagcagctgttgtcaat
gatgaaaactttgtatccaaagagggcaagtccaactatcaactgtggcatgaactctgt
gacctgatctcccagaaccctgataaggtgacctccttgaatgtaggagccatcatccga
ggaggcctcactcgctttacagaccaacttggaaaactttggtgctctttagccgactat
tacatcaggagtggtcactttgagaaagcccgtgatgtgtatgaggaagccattcttaca
gtggtcacagtaagagatttcacacaagtgttcgatagctatgcccaatttgaggagagc
atgattgctgccaagatggagaccactgctgagattgggcaggatgaagatgaagatata
gacctggagctcagactggcccgctttgagcagctgatagctcggcgacccctcctcttg
aacagtgtactactgaggcagaacccccataatgtacatgagtggcacaagagggtaaaa
ctgtatgagggtaatccacggcagattatcaacacttacactgaagcagtgcagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcctttgccaaattctac
gaagaaaacgagcagttggatgatgccaggacaatcttcgagaaggccaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagaaacagagcttcgt
cacgagaactatgaacaagcactgcgcattttaaggaaagctacagccattccatctaag
aaagcagagtactttgatgcgtctgagccagtccaaaacagggtgtacaagtcattgaag
gtctggtctatgctggccgacttggaggagagtcttggcacattccagtctacaaaagca
gtttatgaccgcattattgaccttcgcattgcaacaccacagatcatcattaattatgcc
atgtttcttgaggagcacaactactttgaggaaagcttcaaggcatatgagcgaggcatc
gctctcttcaggtggccaaatgtgtatgacatctggaacacttacctcaccaagttcatt
gatcgttatggtggtaagaagctggagagagcaagggatttattcgaacaagccctggat
ggctgtcctgccaagtttgccaagactatttacctgttgtatgccaaattggaggaggag
tatggattggcaaggcatgccatggctgtatatgaaagagcgacacaggcagtagaaaca
gtggagagacatcacatgttcaatatctacatcaagagagcggctgaaatttatggtgtc
acctataccagagcaatttaccagaaatctattgaggtccttcctgatgagcatgcgagg
gacatgtgccttcgatttgctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacggctaatttctggcaa
gcctggaaagaatttgaaatccgccacggaaatgaggacaccattagagaaatgctgagg
atcaaacgcagtgtccaggccacatataatacccaggtcaactttatgacctctcagatg
atgaaggccacatcaagtgccacaggcacagtgtcagatcttgctcctggccagatggga
attgatgacatgaagatgttggagcagaaagctcaacagcttgctgcagaagctgaaagg
gacaaacccaagcccaaagagaagattctgtttgttaggagtgacacttctcgcagtgag
ttggcccagctttccaaacaagccaatcctgatgagatcgacattgatgatgatgatgat
gacgaggacgacaacaaagaccaaggaccggaagaggtacagcttgaacagaagagtgtc
cctacagctgtctttggaggcctgaaagatgactga
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