Solea senegalensis (Senegalese sole): 122761256
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Entry
122761256 CDS
T07721
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122761256 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
122761256 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122761256 (pabpc4)
03041 Spliceosome [BR:
ssen03041
]
122761256 (pabpc4)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122761256 (pabpc4)
mRNA cycle factors
Stress granule specific factors
122761256 (pabpc4)
Spliceosome [BR:
ssen03041
]
Complex C
Other components
Complex C specific factors
122761256 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
RRM_3
OB_RNB
POP1_C
ApbA_C
DUF6262
Motif
Other DBs
NCBI-GeneID:
122761256
NCBI-ProteinID:
XP_043872382
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMTDEQLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANLRHMSPGSNTQGPRATGQ
TMAPRPSMGVPGPRAMPPYKYATGVRNPNPQVVQPIALQQTQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGGMASTPAAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgaccgggagttatccgatggcttctctctacgtgggcgacctgcacccg
gacatcacggaggcgatgctgtacgagaaattcagccccgccggacccgtgctctctatc
cgggtgtgcagggacatgatcacccggcgatcgctcggatacgcgtacgtcaacttctct
cagcctgccgacgctgagcgagcgctcgacaccatgaactttgacgtggtgaaagggaaa
ccgatcagaatcatgtggtcccagagagacccctccctcaggaagtccggcgtgggcaac
gtgttcatcaagaacctcgacaagtccattgacaacaaagccctgtacgacacattctct
gcctttggcaacatcctctcgtgcaaggtggtgtgcgacgaaaacggatccaagggctac
gcctttgtccactttgagacgcaggacgcggccgaccgcgccatcgagaagatgaacggc
atgctcctcaatgaccgcaaggtattcgtgggtcgcttcaagtcgcgcaaagagcgggag
gccgaacttggcgccaaagccaaagagtttaccaacgtctacatcaagaactttggggac
gatatgactgacgagcagctgaaggagctttttgacaaatatggtaaaactctcagtgtg
aaggtgatgaccgaccccacgggcaaatccagaggctttggattcgttagttacgagaag
cacgaggatgcaaacaaggcggtggaggacatgaacggaacggagctcaacggaaagacc
gtttttgtcgggcgggcgcagaagaagatggagcgacaggcggagctgaagaggaagttt
gagctgctgaagcaagaaaggatcagtcgttatcagggtgtaaacctttacattaagaac
ctggacgacacgatagacgacgagaaactgcgtaaggagttctccccgtttggatccatt
acaagtgccaaggtgatgcttgaagaaggccgctctaaaggctttggctttgtctgcttc
tcttcgcctgaagaagccaccaaggctgtgactgagatgaacggccgcatcgttggctcc
aaacctctctacgtggctctcgctcagcgcaaggaggagcgcaaggcacatctcaccaac
cagtacatgcagcggatcgctggcatgagggccatgccggccaacgccatcatcaatcag
ttccagcccaccagcggctacttcatgcccgccgtgccccaggcccagaataggacgaca
tactatgcacccaatcagctggcacaaatgcgacctaaccctcggtggcagcaacagggt
ggtcgaggtcaaggtggtttccagggaatgcccagctcactgcgtcagccaggaccgcgt
gccaacctgagacacatgagtcctggtagcaacacacagggtccacgagctacaggccag
accatggctcctcgcccatcgatgggagtcccgggccctcgagccatgcctccttacaaa
tacgccaccggcgtccgtaaccccaacccccaggtagtgcagccgattgccttacagcag
acgcagccagcggtgcacgttcagggtcaggagcctctcactgcctccatgcttgctgct
gcgccgcctcaggagcagaaacagatgctgggagagcgtcttttcccactgattcaagcg
atgcatgccaacctggcagggaagatcactggcatgctgctggagatcgacaactctgaa
ctgctgcatatgctggagtctcatgaatctctgcgttcaaaggtggaagaagctgtggcc
gtgctccaggctcatcaggcaaagaaggacgccacccaaaaagtgggcggcatggcttcc
actcctgctgcggccacatcttga
DBGET
integrated database retrieval system
