Solea senegalensis (Senegalese sole): 122765186
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Entry
122765186 CDS
T07721
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04622
RIG-I-like receptor signaling pathway
ssen05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122765186 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122765186 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssen04054
]
122765186 (ifih1)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122765186 (ifih1)
Pattern recognition receptors [BR:
ssen04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
122765186 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
Helicase_C
DEAD
ResIII
CARD
SWI2_SNF2
AAA_22
C1_4
Motif
Other DBs
NCBI-GeneID:
122765186
NCBI-ProteinID:
XP_043875254
LinkDB
All DBs
Position
LG2:11773404..11783747
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AA seq
977 aa
AA seq
DB search
MASATDESHVKVTLIEDFRPRLRQLIVVEQLLDHLHFIGTEQREQVRQRARAQGNIAAAD
LLIDFVIRGPHTEGWFGTFIDALHNSGCEYAADYMEGNIPEPAEEQENELCVRLIQILAP
SLVEMKTDDVCLHCFSKGLLTKEESEIINAETENRGPRSGARELLRSIVRGRPGWFSNFL
NILRITEHQSLYELTGGPPDSGKQDEPTGNEAVSPAAAESCDSPKFKETSFTEAHQDEDL
YEGTSNESEKMPNSPEPSQPDGTDPVSATGGPQSTDIGLRDYQMDVARPALEGKNIIICL
PTGSGKTRVAVYITKKHLDGRRAKGQSGKVVVLVNKVPLVEQHYTAEFLPLLKPTYKVER
VSGDCQLKISFTEIVKRNDIIICTAQILENYLERSHKGEDEGVNLSDLTLIVIDECHHTQ
KGGVYNQIMMRYLKQKHKNKTLQKEQKGTVALPQILGLTASPGVGGATKIHKAEEHILRI
CANLDASKIMTRSIGDFKKEPRKATLSVEDRKEDPFGDVIKKIMNTIHIHAQLSPSCDLG
SQNYEQWIVDKERKAATGDDHKVRVCAEHLRQYSEGLNLSNTIRMCDALSFLNEYHEKEL
KRKTAPDEEQIIHITDTERFLFNLFKENKEELQRLAENPQYENDSLSKLRSKILHEFSSR
EEARGIIFTKTRRSAIALSHWIQENPKFADIGVKASYVIGGGDQSVVKPMTPAEQKEVLK
RFHKGDVNLLVATTVAEEGLDIPACNFVIRYGHVTNEIAMIQAEGRGRAEDSSYTLVEVK
NSGVAEKECVNEYRKSMMDKAIDRIKALNQEVYEKRVLEFQIQAIMEEKVRMKKKKQKDL
KSQKPSDVKFSCRGCSKHVCSGEDIQIIENMHRVNVTTEFSELYIQRENASPQEGRLDFE
ANFFIACKDCGQEWGVMMVYRGIECPCLNVKNFVVTLGGKKMEKCIKWSELPIRFSDFDY
AEYASRIAESSDDEVTQ
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctacagatgaaagtcacgttaaagtgactctcattgaagacttcaggccg
aggctgcggcagctcatagtggtggagcagcttctggaccatttacatttcatcggaacc
gagcagagggagcaggtccgacagagggcgagggcccagggcaacatcgcagctgcggat
ctgctcattgactttgtcatcagggggccacacacagaaggctggttcggcacgtttata
gacgctttgcacaactcaggttgtgaatatgcagcggactacatggagggaaacatccca
gaacctgctgaggagcaagagaacgagctctgtgtccgcctcattcagattctggccccc
agtctcgtggagatgaagactgatgatgtttgtttacactgtttttctaaaggcctgctg
acaaaagaagagtctgaaattattaatgctgaaacagagaacagaggacccaggagtggg
gcccgggaacttctgcgcagcattgtgagaggtcgaccggggtggttttcaaactttctc
aacattttgcggataactgagcaccagtccctgtatgagctgactggagggcctcctgac
tctggcaaacaagatgaacccactggaaatgaagctgtcagtccagcagctgctgaaagc
tgtgacagtcccaagtttaaggaaaccagcttcactgaagctcaccaggatgaagacctg
tacgaaggaacgagcaatgaatcggaaaaaatgccaaatagcccggagccttcacaacca
gatggaactgacccagtgtcggcgaccggaggcccacaaagcactgatattggtcttcga
gattatcagatggacgtggcgagacctgccttggaggggaaaaacatcatcatatgcctc
ccgacaggaagtggtaaaaccagagtcgcagtttatattactaaaaaacatctggacggc
aggagggcaaaggggcagtctgggaaagtagtcgtcttagtgaacaaggttcctcttgta
gagcagcattataccgcagagttccttccactcctgaagcccacgtacaaagtggagagg
gtcagtggagactgtcagctcaaaatctctttcacagagatcgtaaagagaaatgacatc
atcatctgcacggcccagattctggaaaactatttggagaggtctcacaaaggagaggac
gaaggggtgaacttaagtgatctgacgctgatcgtaatagatgagtgtcatcacacgcag
aagggaggcgtctacaaccaaataatgatgcgttacctcaagcaaaagcacaagaacaag
acgctgcagaaagagcagaaggggactgtggcccttcctcagatactgggcctgactgct
tcaccgggggtcggcggagccacgaaaatacataaagcagaggagcacattctgcggatt
tgcgcaaacttggacgcttccaaaatcatgacgaggagcattggggactttaaaaaggaa
cccaggaaagcgactctatctgttgaagacagaaaagaggatccctttggtgatgtaata
aagaaaatcatgaataccattcatatccatgcccagctgagccccagctgtgaccttggt
tctcagaattatgaacaatggattgttgataaagagcggaaagctgcaacaggggacgac
cataaagtacgcgtttgcgccgagcaccttcgacagtacagcgagggcctgaatctcagc
aacaccattcgcatgtgtgacgctttgagtttcctgaatgaataccacgagaaggaactg
aagaggaaaactgccccagacgaggagcagatcattcatattacagacactgaaagattc
ctgttcaatctgtttaaagagaacaaggaagagttgcagaggcttgcagagaatccacag
tatgaaaatgacagcctgtcaaagctgaggagtaaaattcttcatgagttcagcagcagg
gaggaggcccgggggatcattttcaccaaaacacgtcgcagtgctattgcactaagtcat
tggattcaggaaaaccccaagtttgctgacattggtgtaaaagcctcgtatgttattgga
ggaggagaccagagtgttgttaaaccaatgacccctgctgagcaaaaggaggtgttgaaa
aggttccacaaaggtgacgtcaacttgctggttgctactacagtagcagaggaaggtttg
gatataccggcctgtaatttcgttatccggtatggacatgtgaccaatgagatcgctatg
attcaggctgaaggcagagggagagctgaggacagcagttacactttggtcgaggtgaag
aactctggcgtggctgaaaaggagtgtgtcaatgagtaccgcaaatccatgatggacaaa
gccattgaccgcatcaaagccttaaatcaagaggtctatgagaaacgggtcctggagttt
cagattcaggcaataatggaagagaaagtgaggatgaagaagaagaagcagaaagacctg
aagtctcagaaaccgtccgacgtgaagttcagctgtaggggctgcagcaaacacgtctgc
agtggtgaagacatccagatcatcgaaaacatgcacagagtcaatgttacaacagagttt
agtgaactatacattcagagagaaaacgcctctccgcaagagggacgtcttgattttgag
gccaatttcttcattgcatgcaaggactgtgggcaggaatggggcgtaatgatggtgtac
cgtggaatcgagtgcccctgcctcaatgtgaaaaactttgtggtgacactcggtgggaag
aagatggaaaaatgcatcaagtggagtgagcttcccatcaggttttctgactttgactac
gccgaatatgcaagccgcatagcagagagctcggatgatgaagtgacacaatga
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