Solea senegalensis (Senegalese sole): 122765229
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Entry
122765229 CDS
T07721
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03013
Nucleocytoplasmic transport
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122765229 (upf3a)
03015 mRNA surveillance pathway
122765229 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122765229 (upf3a)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122765229 (upf3a)
mRNA cycle factors
P-body specific factors
122765229 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
122765229
NCBI-ProteinID:
XP_043875317
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All DBs
Position
LG2:complement(18648104..18654402)
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AA seq
467 aa
AA seq
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MRSEKDQMIVAKEKSVVEIQFRDIPREQDNIPGNLKPKEEKKEVFTKVVIRRLPPHLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDDEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRIKDKSDTGEADRGKWEKAGGQMKSK
DPKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKYMRRKDETKWGKGYC
QDRAKKEGHHHGFSYCPDSGDKLGKEDREDLSNRKERLRNKVSEKDRPAMQLYQPGARNR
KRMNSAGKGYDCIPVGPSSESGADHCYEVVTMATGLEKMFDKSKDEL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcggtctgaaaaggaccaaatgatcgtggccaaggagaaaagcgtcgtcgagatacag
tttagggacatcccgagagagcaggacaacatccccggtaacctcaaaccgaaagaggag
aagaaggaggttttcaccaaggttgtgattcgaaggcttcctcctcacctgtcaaaagac
caactagaagaacagctcagccctctgccctcctatgactattttgagttcttcccagca
gatcaaagtctgtatcctcacctcttctcgagagcatacatcaattttaaaaaccctgaa
gatatcctgctgtttagagacagatttgatggctatgtctttattgacaacaaaggtcag
gaatatcctgcagtagtagagtttgcccccttccagaaaatttccaagaagaagctaaaa
aagaaagatgccaaagccgggagcattgaagaagatccagagtacaagcgattcttggag
aattactcctgtgatgacgagaagtctatggccaatcctgagactctcctgggagagata
gaggccaaaaccagagagctcatagccaaacgaacaacacccctgttggagtacataaaa
aataagaaaatagagaaacagagaataagagaggagaagagagaggagcggaggaggaga
gagctggaaaagaaacggcaaagagaagaggagaagaggaagcgacgagaggaggagagg
cgcaaacggaaagaggctgagaagcagaagaaactgtccgataaagacatcaaaatcaaa
ctcctgaagaagagcgacagagacgacgatgtggattcggaccgaattaaggacaaaagt
gacactggggaggcagacagagggaaatgggaaaaagcaggaggacaaatgaagtcaaag
gaccccaaggaaaaaggtcagcctgagagtgacaaggagcaaagagaacagcacggacgg
cgacagagggataaagatcacagagggaaagatgaagagcggaaacgacagagacaccac
tacgagtttgataaatatatgcggcgtaaagatgagaccaagtgggggaagggctactgc
caagaccgagccaagaaagagggacatcaccatggcttctcctactgtcctgacagtgga
gacaagctagggaaggaagacagggaggacctgagtaacaggaaggaacgcctccgaaac
aaggtgagcgagaaggaccgtcccgccatgcagctctaccaaccaggcgcacgcaaccgc
aaacgcatgaactcagcaggcaaaggctacgactgcatccctgtgggcccctcatctgaa
tccggagcagatcactgttatgaggttgttactatggcaacagggctggagaagatgttc
gacaagagcaaagatgagctgtga
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