Solea senegalensis (Senegalese sole): 122765293
Help
Entry
122765293 CDS
T07721
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122765293 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122765293 (prpf40a)
Spliceosome [BR:
ssen03041
]
Complex A
U1 snRNP components
U1 related factors
122765293 (prpf40a)
Complex B
122765293 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
122765293
NCBI-ProteinID:
XP_043875399
LinkDB
All DBs
Position
LG2:12205352..12217388
Genome browser
AA seq
880 aa
AA seq
DB search
MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHYPPMGMPPMGQRPPSMTPMPPGI
IPPGMMPPMGAPPMGQMPGMMPPMMPGMMMPPRIPAAAVQPTGPPGVDSTAAAPGTASTT
NGSPPEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDDLKSTVEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPSITIAPAVQADITAPV
AIVTEAETAKAVTEEHLTQAVMHLTAEVKTVDVPVASSESPAATEVVKASVEVIKEERPE
LQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFN
AYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFSELEVWSCVPER
DRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPT
FAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELH
DHGQLHSMSAWMEMYPTLSSDIRFVNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDI
LKDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARK
MKRKEAAFKNMLKQATPPLEPEASWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEH
ECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESER
SYKKSKKHKKKAKKRRHKSASPDSDTEKKGREREGKRDKDLEKDKENDKSRGKSRSDSKQ
KSPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggcgtaccg
ccctcagggatacctcccccatttatgggaccaccaggcataccacctcattaccctcct
atgggaatgcccccaatgggacagcgacctccgagcatgactcctatgcctcctggtata
attccccctggaatgatgccaccaatgggggcacctccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcataccagctgcggctgtacag
ccaacaggaccgcctggtgttgactccacagctgctgcacccggaacagctagtaccaca
aatggctctccaccggaagaacagccaaagaagaagtctctttggactgaacacaaatca
ctggatgggaagacttactattacaatacagagaccaagcagtccacatgggagaaacca
gatgatctgaaatctactgtagagcaaatgctgtctaaatgtccctggaaggagtacaag
tcggacacagggaagccttattattacaactcacagacaaaggagtccagatggaccaaa
cccaaagaactggaagatctggaagctatgatcaaagcagaggaaaatggaacggcggag
gcagcagcccctagcatcaccatagcccctgcagtgcaagcagacattacagcccctgtg
gcaattgtaacagaggcagaaactgcaaaagcagtcacagaggaacacctcacccaggcg
gtcatgcatctcacagctgaggtcaagacagtggacgtgccagttgcttcctcagagagc
ccggctgccacagaggtggtgaaagccagtgtcgaagtcataaaggaagaacggccggag
cttcagaagaaaacgtacaaatggaacacaaaggaggaagccaagcaggccttcaaagag
ctgctgaaggagaagggtgtgtcctcaaactcctcttgggaacaggcgatgaaaatgatt
atcaacgatcctcgctacagcgctcttcctaagctgagtgagaagaaacaggcgttcaat
gcttacaaagtccagacggagaaggaagagaaggaggaggccagaattaaatacaaagag
tccaaagagacctttcagaggtttttggagaatcacgacaagatgacgtccaccaccaga
tacaagaaagcagaacagatgtttagcgagctcgaggtttggagctgcgttccagagaga
gacagactggagatctatgaagacgtgctcttctatctcgccaagaaagagaaggaacaa
gccaagcagctgagaaagaggaactgggaagctctaaagaacatcctggacaacatggcc
aacgtcacctaccgcaccacctggtctgaggcccagcagtacctgctagacaaccccacc
tttgctgaagacgaggagctgcagaatatggacaaggaagatgccctcatttgttttgag
gagcacatccgagcgctggagaaagaggaggaagaagagaaacagaagactcttctcaga
gagagaagacgacaacgcaagaacagagagtcgttccagaaatttctcgatgagctccat
gaccacggtcagcttcactccatgtctgcctggatggagatgtacccaaccctgagctca
gacatccgcttcgtcaacatgctgggtcagccgggttccactccactggatctgttcaaa
ttctacgtggaagacctgaaggctcgctaccacgatgaaaagaggatcatcaaagatatt
ctgaaggacaaaggcttcttggtcgaagtgaacaccagcttcgatgactttggatcggtc
atcagctcggacaagagagccaccacgctggacgcaggaaacataaagctggccttcaac
agtttactggaaaaggctgaagccagagagagggagcgcgaaaaggaggaagcccgcaag
atgaagaggaaagaggcagccttcaagaatatgctgaaacaggccacgccgccactggag
cccgaggcttcatgggagggagtaagagagcggttcctgaaagagtctgcctttgaagac
gtgactctggagtcggagaggaaaaggatatttaaggacttcatgcacgtcttggagcat
gagtgccaacatcatcactccaagacaaagaagcactcaaagaagtccaagaagcaccac
aggaagcgctcccgctctcgatcgggttcagagtcagaggacgaggagtaccacaagaag
aagaagaggtcacagtccaagtccccctctgaacgctcctctagtggagaatctgagaga
agctataagaaatccaagaagcacaagaagaaggccaagaagaggcgccacaagtctgca
tcaccagattccgacacggagaagaaaggaagagagcgcgaaggaaaacgggacaaggac
ttagagaaagataaagagaacgacaagtctcgggggaagtctcgctccgactctaaacag
aagtctcctaaaagaaaagcagccaaagaggagggtggctgggatacgtccggcagtgag
ctgagcgaaggggagctggagaaaaggaggagaactttactggaacagctggatgcacct
tga
DBGET
integrated database retrieval system
