Solea senegalensis (Senegalese sole): 122765584
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Entry
122765584 CDS
T07721
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
ssen04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122765584 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122765584 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122765584 (sympk)
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122765584 (sympk)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122765584 (sympk)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122765584 (sympk)
U7-dependent histone pre-mRNA processing factors
122765584 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
122765584
NCBI-ProteinID:
XP_043875867
LinkDB
All DBs
Position
LG2:5210651..5220904
Genome browser
AA seq
1223 aa
AA seq
DB search
MDRSSEEEETSRVIYMTTSEKVVDLLNQAALIPTDEKLTVLKQVQELIINKDPSLLDNFL
DEMIAFQTDKSIEVRKCVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILTLT
HLYKVTLQWLVRSKTISDMQEACWDMVTQMKGDVLALLDSENDGVRTHAIKFTESLIITL
SPRTSDSDVPKRQDGDISLDKVPKDHSYIRYDALCEEGKAALDKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCS
LEFQGQISTLLLDLGMPQSEITRSTPALREQRKRPRHEQYTEGKKVKIEPALAEDDEDKE
EPAPLAAPKPASAPVAQSAIDLTAEFLHPLLNSENVANLVLISMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKARGDDAVKEEGTEDDLANKDLLIKR
KIPGMMVGQAISVVGGYTEKVPTPEAPTSVKRLPEPILPTAQTKMTGASGRKKVFRLSDV
VQPLSDDQIEKLISRSVKRVLVSEKAIAQSGMSHVRVKLLSRLVTQFEGMMKEDVLEFIL
DDIRTRSDLAFSLLYQEYNTYLSQLPNGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVL
EAPIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVR
AMALTFLKRMYEKDQLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAATWTEDTVRQ
CLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCP
KGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPK
LIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLC
FGERNVYTSEVLAVVMQQLMEHSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVW
KYPKVWEGFVKCCQRTKPQSFSVLLQLPPAQLSSVFERCPEMREPLLLHVRSFTPHQQSH
IPNSIITILEANKKPQLKPETVVEQEMEPVPAPAASVPETAPTATMAEPETLDQHDAVIV
KDEEEPMEQEHLDPVIQEQPANLLTISQVESETRSETPSPQPEPAEEPMEASQSEPADPQ
EPEKEVESEVTAPDAGSGREDAE
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggaccgctcttcagaggaggaggaaacctcccgtgtcatttatatgaccaccagtgaa
aaggtggtggatctcctgaatcaggccgctctgatacccacagatgaaaagcttactgtg
cttaaacaggtccaggagctcatcatcaacaaagatccatctcttctcgacaatttccta
gatgagatgattgcatttcagactgacaagtcaattgaagtgagaaagtgtgtcattggc
ttcattgaggaagcatgtaaaagagacaatgagctcctcctcagactcatcgccaacctc
aacatgttgctgaaggatgaaagtgtgaatgtggtgaaaaaggccatcctcacactcacc
catctgtacaaagttactctgcagtggctggtgcgctccaagacgatatcagacatgcag
gaggcatgctgggacatggtcacacagatgaaaggggatgttctggccctgctggattct
gaaaatgacggcgtgcgcactcatgcaatcaagttcacagagtcgctaattattactctg
tctccacggacatcagactctgacgtccctaaaagacaggacggtgacatcagcctggat
aaagttcccaaagatcactcatacattcgttatgatgccttgtgtgaggagggaaaggct
gcactggataagctgctgaagttcatggtacaccctgctatttctagcatcaacctcaca
acagcactgggctcactggccactattgcccgtcagaggccaatgttcatgtcagaagtg
gtgcaggcgtatgagacactgcacgcaaacctaccacccactctggctaagtcccaggtc
agtagtgtgagaaagaatctgaagctacatctggtggcggtcctcaagcatccctgcagc
ctggagtttcagggtcaaatcagcacgctgctgctggacctgggaatgccccagagcgaa
atcacccgatctacacctgcactgcgcgagcagcgcaaacgacctcgccatgagcagtac
acggaaggaaagaaggtcaagatagaacctgccctggctgaagacgacgaggacaaagag
gagcccgctcctctcgcggcccctaaaccggcatctgctccagtggcgcagtctgccatt
gacctcacagctgagttcctgcacccactgctcaactctgagaatgtagccaacctggtg
ctaatcagcatggtgtatctgcctgatgtcatgccagcatccttccaggccacatacaca
cctgttgagtcagcggggactgatgcccagataaaacatctggccaggctgatggccact
cagatgactgcagctgggatcggtccaggacttgagcagtgcaaagccagaggggatgat
gcagtcaaagaggaaggcactgaggacgacctcgcaaataaagacctgctcattaagcgc
aagattccaggtatgatggtgggacaagccatctctgtggtgggcggttacacagaaaag
gttccaaccccagaggctcccacctcagtcaagaggcttccagaacccattctgcctaca
gcacaaaccaaaatgacgggggcgagtgggaggaaaaaagtgtttaggttgtcagatgtc
gtccaacctttatcagatgaccagattgagaagttaatctccagatcagtgaaacgtgtc
ctggtttcagagaaggcaatagctcaaagtggcatgtcccatgtccgagtgaagctcctc
tccaggcttgtgacacaatttgaagggatgatgaaagaagacgtgctggaatttatctta
gatgacatcaggacaaggagcgacctggcgttttctctcctctaccaagagtacaacact
tacctcagccagctgccgaatggactgttggacagctatgaccactgtctgtacacgttg
ctgtcgggcctgcaggagaaaccagagcagagggacggactcttcaccaaactggtactg
gaggctcccatcataacagaatcagctttggaagtaataagacgttactgtgaggacgag
tctcgggtgtatttggggatgacgactctaaaggagctgattgtcaaacggccttcaagg
cagtttcagtatctacatgttcttctggatctcagctcgcatgaaaaagagaaggtgcgg
gccatggccttgactttcctgaagcgcatgtatgagaaagaccagctcagagactacatc
gagaagtttgccctgaactacctgcagcttctggttcaccccaaccctccatctctgctg
tttggggctgacaaagacacagaggtggctgccacctggaccgaagacacggtgagacag
tgtctcttcctctacctgtccctgcttcctctgaaccatcgcctggtccacgagctggca
tccgtctacaccgaggccatcgctgacatcaagcgcagcgttcttcgagcaatagagcag
cctatccgtgggatggggatgaactctcccgagctgctgcttctggtcgaaaactgtcct
aaaggagcagaaacattagtcactcgctgtctgcacattctgacagataaagtacctccg
tctccagagctggtggagagagtgcgagatctttaccataaacgtgtgccagatgttcgt
tttcttatcccggtcataaatggcctagaaaagaatgaagtcatccaggctctgcccaag
ctgatcaaactaaatcctattgtcgtaaaggaggtgttcaaccgtctgttgggaactcag
cacagtgaaggaagttcatccgtgtcgccactcaccccaggagacctgctgattgccttg
cacaacatagactcaaccaaatgtgacatgaagtctatcattaaagccaccaacctgtgc
tttggggagaggaacgtatacacgtcggaggtcttggcggtggtgatgcagcaactgatg
gagcacagtccgctccccatgctgctcatgcgcaccgtcatccagtccctcaccatgtat
ccccgactgggcggctttgtcatgaacatcctgtcgcgccttattgtcaagcaggtgtgg
aagtatcctaaggtgtgggagggatttgtgaagtgctgtcaaaggactaagcctcagtcg
ttcagtgtgctccttcagctgccgcctgcccaactgtcgagtgtgtttgaacgctgccca
gagatgcgagaaccgcttctgctgcatgtccgctccttcaccccccatcagcaatctcac
atacccaactccatcattacgatcctggaagcaaataaaaaaccacagctgaaaccagag
actgttgtggagcaagagatggaaccagtccctgctccagctgcctcggttccagaaacg
gctcccactgcgacaatggcagaaccagagacactagatcagcacgacgctgtcatcgtg
aaagatgaagaagaaccaatggaacaagaacacttggatccagtgatacaggagcaaccg
gccaatctgttaaccatctcccaggtggagtctgaaacaagaagcgaaacaccgtcacct
cagccagaaccagctgaagaaccaatggaggcgtctcaatctgaacccgcagatccacag
gagccagaaaaagaggttgaatctgaagtcaccgcgccagacgctggaagtggcagggag
gatgcagaataa
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