Solea senegalensis (Senegalese sole): 122765795
Help
Entry
122765795 CDS
T07721
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssen03016
]
122765795 (rtcb)
Enzymes [BR:
ssen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122765795 (rtcb)
Transfer RNA biogenesis [BR:
ssen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122765795 (rtcb)
Prokaryotic type
tRNA splicing ligases
122765795 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
122765795
NCBI-ProteinID:
XP_043876158
LinkDB
All DBs
Position
LG3:31535277..31539443
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIGSNCWRIKKGFVPNMKVEGIFYVNEPLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQSLFNHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAEVFTTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagttacaacgatgagcttcagtatctggacaaaatcggcagcaactgctgg
aggattaaaaaaggcttcgttcccaacatgaaggtcgaaggcattttctacgtcaacgaa
cctctggagaaactgatgttcgaggaacttcgtaacgcctgtcgaggaggaggtatcggt
gggttcctcccggccatgaagcaaatcgggaacgtggcggcgcttcccgggatcatacac
aggtccatcgggctcccagacgtccactcgggatacggattcgcaatcggaaacatggcg
gcgttcgacatgagcgatcccgacgctgttgtgtctccaggtggcgtcggctttgacata
aactgcggcgtccgtctcctgaggacgaacctggacgagagcgacgtccagccggtgaag
gagcagttggcccagtcgctcttcaaccacatcccagtaggagtcggatccaagggagtc
attcccatgggagcaaaggacttggaggaggcgctggagatgggcgtggattggtctctg
agggaaggctatgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgcta
caggccgaccccaacaaggtgtcgtccaaggccaagaagaggggcttaccccagctggga
actctgggagcaggaaaccactacgccgagatccaggtggtggacgagatctacgacgac
tacgccgccaagaagatgggcatcgaccacaaaggccaggtgtgcgtgatgatccacagc
ggcagccgaggcctcggacaccaggtcgccacagatgctctggtcgccatggagaaggcg
atgaaaagagataagatcacggtgaacgaccgacagctggcatgcgctcgcatcacctcg
caggaaggtcaggattacctgaagggcatggcggcggcgggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcacccgacaggcgtttgctgaagttttcaccaccacgccg
gacgacctggacatgcacgtcatctacgacgtgtcgcacaacatcgccaaagtggaggaa
catgttgtggacgggaagcagaagacactactccttcaccgcaaaggctccacccgagct
ttcccgccacaccacccgctcatccctgtcgactatcagctcacagggcagccggtgttg
atcggagggacgatgggaacctgcagctacgtcctcacagggacggaacagggaatgacg
gaaaccttcggtaccacctgtcacggagcgggtcgcgctctttcacgagctaagtcccgc
aggaacctggacttccaggacgttctggacaaactcgccgacaagggcatcgcgatccgt
gtggcttcacccaaactcgtcatggaggaggctcctgagtcgtacaaaaacgtgacggac
gtcgtcaacacttgtcacgacgcaggaatcagtaagaaggcgatcaaactgcgaccgatt
gctgtgatcaaaggctga
DBGET
integrated database retrieval system
