Solea senegalensis (Senegalese sole): 122765802
Help
Entry
122765802 CDS
T07721
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122765802
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122765802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122765802
NCBI-ProteinID:
XP_043876169
LinkDB
All DBs
Position
LG3:complement(15553729..15727531)
Genome browser
AA seq
715 aa
AA seq
DB search
METARGASRCVEKMEKAAPQKRQHSRTTVLNILSSLCSVASVAFCILLSINAADIQNRVV
DLESGGGERPVIRAPGYSTDDLNSLIQQRVNEVLSQRSYENYVKIRTARQTSPECNCPPG
PPGKRGRRGRNGEPGPPGPPGPQGEKGDQGDQGPRGLPGLPTLAALHSNQILTVKMVFPK
INHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGD
PGEPGETGPTGPEGPEGLKGSLGPPGVPGVDGMKGDIGIPGLDGVPGAKGEMGERGEKGD
MGEEGPKGDIGEKGDAGSSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQ
GEPGLPGLPGTKGERGDHGPPGKGERGDIGPVGPKGSQGEAGTPGFKGSKGETGDKGDLG
AAGLKGPPGQKGDQGVTEIIDYNGNIQEALQKITSITVTGPAGPPGPIGPQGIKGDRGMP
GLPGLDGERGYKGSKGDMGMPGASGDKGTTGLPGLPGINGAKGEKGDLGLPGPQGSSIIG
PPGPSGPHGPPGPMGPHGFPGPKGEAGLHGVKGIRGEPGHKGDRGPLGLPGASGLDGKPG
IRGMDGPTGPAGPAGPKGDIGEKGAQGEPGPRGPYGLPGAPGTPGLDGLPGLRGDKGDVG
ERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgcaagaggagcatcaaggtgcgtggagaaaatggagaaagcggcgcctcag
aagcgacagcatagccgcacaacggtgctcaacatcctctcctctctgtgttccgtggcg
tccgtcgccttctgcattctactcagcattaacgcggccgatatccagaaccgagttgtg
gatttggagagcgggggaggcgagcggccggtgatccgagccccgggttactccacggat
gatttaaattccctgattcagcagagagttaatgaggtgctctcgcagcgctcctatgaa
aattatgtcaagattcggactgcgagacaaacgtcacctgaatgcaactgcccaccagga
cctccaggaaagcgaggaagaagaggccgcaatggagaacctggacctcctggccctcca
ggtccgcagggtgaaaagggggatcaaggcgaccaaggaccacggggattgcctggtctc
cctacgctggctgctttgcacagcaatcagatcctgactgtcaagatggtcttccctaag
atcaatcatggctttctttccgctgaccagcagctcattaagcggcggctcattaaggga
gatcaggggcaagcgggaccacctgggcccccagggccaccggggcctcctgggcccaga
gggccaccaggggacactggcaaagatgggcctagaggtgtgcctggtctaccaggtgat
ccaggggagcctggagaaacaggacctacgggtcctgaggggccagaagggctaaagggt
tcccttggacctcctggtgttccaggcgttgatggaatgaagggggatattggcatccca
ggactggacggtgtccctggagccaagggtgaaatgggagagagaggtgaaaagggtgat
atgggtgaagaaggaccgaaaggcgatataggcgagaagggagatgcaggctcctctgca
gccggcatcaagggtgaacctggagagcctgggcgaagtggacacaagggagagccagga
cttccagggctgcctggactcccagggataaagggtgagcctggattcctaggcccccag
ggagaaccaggacttccaggcctcccagggactaagggtgagagaggtgatcatgggcca
ccaggaaagggtgagcgaggagacatcggacctgtcggcccaaagggttcacaaggagag
gctggtacacctggttttaaagggtcaaagggtgagactggagataaaggagatttggga
gccgctggcctgaaggggcctcctgggcagaaaggagaccaaggggtgacggaaatcatc
gactacaacggaaacattcaggaggctttacagaagattacctctattacagtgacgggt
cctgctgggcctccagggccaattggaccacagggtataaagggggatcgtggtatgcct
ggtctccctggactcgatggagagcgaggctacaaaggttcaaagggagacatggggatg
cctggagcttcaggggacaaaggaacaactggtttacctgggctccctggtatcaatgga
gccaaaggtgaaaagggagatttagggctccctggtcctcagggttcttcaatcattggc
cctccagggccatcagggcctcatggaccaccaggacccatgggaccccatggtttccca
ggaccaaagggtgaagccggcctacatggtgtgaagggtataagaggggagccaggacac
aaaggcgatcgtggacctttgggtctccctggagcctccggcttggacggcaagcccgga
attaggggcatggatggacctacgggtccagctggtcctgctgggccaaagggtgacata
ggtgagaaaggagcacagggcgagccagggccaaggggaccttatggacttcctggagct
ccaggaacaccaggtttggacgggttaccaggcttaaggggcgataaaggcgacgttggg
gaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaagggcgagaaa
ggagaacagggtgcccctggattagatgcaccctgcccattgggcccagatggtttacca
atgcctggatgctggcagaagggagtcacgccatggctggtagcctga
DBGET
integrated database retrieval system
