Solea senegalensis (Senegalese sole): 122765898
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Entry
122765898 CDS
T07721
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04510
Focal adhesion
ssen04512
ECM-receptor interaction
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122765898 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122765898 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122765898 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122765898 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122765898 (col4a6)
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122765898 (col4a6)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122765898 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122765898
NCBI-ProteinID:
XP_043876304
LinkDB
All DBs
Position
LG3:complement(897317..969800)
Genome browser
AA seq
1715 aa
AA seq
DB search
MKLRLCVFAVAVLLLRSAHAETDFNEPCAGEDCSRGCKCNPEKGSRGRPGPLGDVGSSGA
EGSRGGLGPQGPKGEKGHIGLKGPSGVKGDKGPMGVPGFQGTDGVPGHPGLPGGRGPSGL
DGCNGTRGEAGDPGYGIGPPGFPGNAGPIGPKGQKGEPRYISDDGTTGYPGVPGPDGRPG
NRGPDGPTGFPGPRGPDGYSGPPGLPGSPGPMGSSGEGYRGERGDKGDVGLPGPSGTPGD
GSLRSEQTLTIYKGDRGEPGPKGVRGFDGTPGAPGPFGYSGEYGEKGLPGYPGARGLPGF
NGPPGAQGSRGFRGDPGFSGQPGYIGPKGDQGDPGQPGPPTYISEQGTSVQGQRGDPGYN
GLPGARGDQGPPGLPGQPGRPGEVLDSTGRGGSRGFPGTPGPKGEKGNRGATPYGSEGLP
GFPGLPGAIGPPGPPGPTSLTGDPCVIYPVLPKGYPQGGINNYPGQPGLPGARGPPGDTG
FQGLTGDPGDCACLGGGTSGQTGVRGPPGPDGRPGYPGPKGEGGDPGTPGYGGGQGSPGR
RGDPGVFGRKGEKGTSYYPNLGLGVKGERGNPGLRGPNGETGKPGRDGLPGFPGSPGPPG
DGGYGTVGEKGFPGFPGSKGRSGGPGEPGPGYAGTPGFRGEPGEPGIPGLPGQPGLPGPR
GENSCEGVIDVEEGTGQVLPCTIPGEIGDPGYPGIPGRPGPKGQPGLPGGSGRPGFDGAK
GERGDPGFGGQPGPQGFPGPRGDPGVPGIPGQGFDGGRGKDGIPGRPGAKGQPGEVLGAT
PGSPGRNGLPGIPGDKGQPGTSGGPGSPGFDGRSGVPGLKGERGVDGLPGYTGPPGPPGE
PTGGIPGRPGAPGNKGLSGSPGCPGFPGRKGDRGDPGFPGPAGMKGTPGLPGIPGSPGSR
GLPGPPGPGTRDGIPGIPGRKGERGFPGLTGFPGQPGRPGSPGFPGGKGFAGGPGRDGRN
GGPGYPGEKGDRGYPGPPGLPARVLQSVLGVKGEPGNNGGNGLPGFPGPRGDKGFPGLPG
RQGLPGLPGFAEQSKGQPGDNGFPGRPGGPGFPGPKGEAGIPGFPGISGPRGDDGLPGFP
GNNGEPGRPGGKGTPGESYGYPGGPGAKGQPGDNGYPGGRGNDGIPGDSGLPGSPGYSGA
KGIPGEAGRPGITGSPGFPGPKGQAGYPGRRGQDGSPGLPGGPGGPGAKGLPGPPGLDGL
NGLAGPKGLPGTPGGSLGGRPGQPGFPGQKGERGISYPGGPGIPGGKGERGDQGGPGLPG
FPGRPGPAGQTIGSNVPGPTGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDPGLPG
FPGSPGRKGEPGLPGGSGSPGLYGAKGARGDTGFSGGPGQKGFTGEPGFYGSTGPKGVRG
RPGPKGPPGTTMPGPPTDYRPRFGEQGFPGTGGPSGTPGEPGQSGLPGRPGPKGRPGPVG
KLGRTGSAGSGGPLGDAGPPGFPGPPGEQGLPGAAGRPGIPGGVGRSHSIGYTLVKHSQD
SQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEICYYA
SRNDKSYWLSTTAPIPMMPVSEGQIQPYISRCSVCEAPSLAVAVHSQDMNIPTCPPGWRS
LWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGSCHYFANKYSFWLTT
VNAGQEFLYSPNQETLKGGQERSRVSRCQVCSKFL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaggttgtgtgtgttcgcagtcgcagtgttgctgctcagatctgcgcacgca
gaaaccgactttaatgagccgtgtgcaggtgaggactgcagcagaggatgcaagtgcaac
ccagagaaaggcagcaggggtcgaccggggcctcttggtgatgttggatccagtggagct
gagggctcacgcgggggccttgggcctcaagggcccaaaggagagaagggccatattgga
ctgaaggggccgtccggtgttaaaggcgacaaaggaccaatgggtgttcctggattccaa
ggaactgacggcgtaccaggtcacccgggtctgcctggtggccgagggccatctggactc
gacggttgtaacgggaccaggggagaagccggagatcctggttacggcattggaccacct
ggattccctggaaatgctgggccaattgggccaaagggccagaaaggagaaccccgatac
atttcagacgatggaaccacaggttatccaggtgtgccaggacctgacggtcgacctggt
aacagaggtcctgatggtccaacaggtttccctggtccaagaggacctgatggttacagc
ggcccacctggtcttcctggttccccagggcctatggggagcagtggtgaaggatatcgc
ggagaaagaggagacaagggcgacgtgggtcttcctggtccaagtggaacccccggtgac
ggatcgctgagaagtgaacaaacgctcactatctacaaaggagataggggagaacctggt
ccgaagggggtcagaggattcgacggaacccccggagcacctggaccttttggttacagt
ggtgaatatggagaaaagggccttcctggataccccggtgcaagaggtcttccaggtttt
aacggtccacctggcgcccaaggaagcaggggattcagaggggatccgggtttctctggt
caaccaggatacatcggacccaagggcgaccaaggagaccccggacaacctggacctcca
acctacattagtgagcagggcacatctgttcaagggcaacgtggtgacccgggttataat
ggtctgcccggtgcccgaggtgatcagggacctccagggttgccaggacagccaggtcga
ccaggagaagtgctggattccacaggtcgtggtggctctcgaggtttccccgggaccccc
ggcccaaagggagagaaaggcaaccggggcgcaacaccgtacggatctgaaggactccca
ggctttccaggactccctggagccatcgggcctcctggacctccaggccccaccagcttg
actggtgatccctgcgtcatctatcctgtcttgcccaaaggttatccccaaggtggcatc
aataattacccgggacagcctgggttgccaggtgccagaggaccaccaggagacactgga
ttccaaggcctcacaggtgaccctggtgactgtgcatgtcttgggggcgggacctcgggg
cagacgggggtgcgcggaccccccggacctgacggcagacctggatacccgggaccaaag
ggagagggtggtgaccctggtactcctggatacggcggcggtcagggatctcctggtcgg
cgcggtgatccgggcgtgtttggtcgtaaaggagagaaggggacgtcgtactatcctaac
ctgggtttgggtgtgaaaggagagcgtgggaatcctggactgagaggaccaaacggagaa
acaggaaaacccggcagagacggactgcccggattccccggatcccccggacccccgggt
gacggtggttacggcacagtgggagagaaaggtttcccaggattcccggggtctaaaggt
cgctccggtgggcccggcgagcctggacctggttacgccggaacccccggctttcgcggt
gaacctggagagcctgggatacctgggttaccggggcaaccgggcttacctggacccaga
ggtgaaaacagctgtgaaggggttattgacgtcgaagagggaacgggccaagtgctacct
tgcaccatacctggtgagatcggagaccccggataccccggcatacctggacgaccaggc
cctaaaggtcaaccaggcctcccaggaggatcgggacgtccagggtttgacggagccaaa
ggagagagaggagatcctggctttggaggccaacctggacctcaaggttttcctggaccc
agaggagatcctggagttccgggtatcccaggacagggctttgatggaggcagggggaag
gatggtatccccgggcgtcctggggccaagggccagcctggagaggtcctgggagccaca
cctggctctccaggaagaaacggcttacctggaattcctggagacaaaggccagcctggg
acatcaggaggacctggatcacctggttttgatggacgctcaggtgtcccagggttaaag
ggagagcgtggagttgacggacttcccggttacactggaccaccggggccgccaggtgag
ccgactggtggcattcccggtcgtcctggagctcctggcaacaagggactgagcggatca
ccaggctgcccaggtttccctggacggaagggagacagaggagatccaggattcccaggg
cctgctgggatgaagggaaccccaggactaccaggcatccctgggtcaccagggtcaaga
ggactccctggacctccaggaccaggaactagagatggaatcccaggaataccaggaagg
aaaggtgagagaggcttcccaggactgacgggtttccctggacaaccaggacgacctggt
agtccaggatttcctggaggaaaagggttcgctggagggcctggcagggatggacgtaac
ggtggacccggatatcccggagagaaaggtgaccgaggataccctggccctcctggcttg
cccgcaagagttcttcagtcagtcttgggagtgaagggagagcccggtaacaatggaggc
aacggccttccaggcttccctggacccagaggtgacaaaggttttccaggtctgcctggt
cgtcagggtctgcccggacttcctggttttgctgagcaaagtaaaggacagccaggagac
aacgggtttccaggacggccaggaggtccaggctttcctggacctaaaggagaggctgga
atccctggattccctggcatttctggaccaaggggtgatgatggtcttcctggtttccct
ggtaataatggagaacctggtcgacctggtggcaaaggaacacctggagagagttatggt
tatcctggaggcccaggtgctaaaggccagccaggagataacggctaccccggtggtcgt
ggtaacgatggcatccctggagacagcggccttccaggaagtccaggttactctggagca
aaaggaattcctggtgaagcagggcggcctggtataacaggctcccctggtttccctggg
ccaaagggtcaggctggatacccaggaagaagaggacaagatgggtctcctggtttacct
ggaggtcctggaggacctggagcaaaaggtttgcctggaccccccggtttggatggactt
aatggcctcgctggtcctaagggccttcctggaaccccaggtggaagcttaggaggccgc
cctggtcaacctggttttccagggcagaagggcgagagaggcatctcctacccaggaggt
ccaggaatccctggaggcaagggagagagaggagatcaaggtggtcccggactccctgga
ttccctggtaggcctggtcctgccggtcaaactattgggtctaatgttcctggacctacg
ggagaccctggccttcccggactggatggagagtatggtttccaaggtcctccaggtcca
cctgggccacctggtccaggtacagcacagggagatagaggtgaccctgggctccctggc
ttccccggctccccaggcaggaagggagaaccaggactcccgggaggctctggatccccc
ggactttatggtgccaaaggagcacgaggtgacactggtttcagtggcggtcctggtcaa
aaaggtttcactggtgagcctggtttctatggaagcacaggacccaagggagtgcgagga
cgccctggtcctaagggtccccctggaacaacgatgcctggaccgccaactgactacagg
ccacgctttggggaacagggttttccaggcacaggtggaccttctggtaccccaggagag
cctggtcagtcgggattgcctggacgtcctggtcctaaaggtcgccctggtcctgtgggt
aaattgggtcgtactggatctgctggttctggtggacctcttggtgatgccggacctcct
ggtttccctggaccacctggcgaacaaggtcttcccggcgcagcaggtcgtcctggcatt
ccaggtggtgtcggtcgcagtcacagcattggctacaccctggtgaagcacagccaggac
tcccaggttcccatgtgtcctcagggaatggccaagctgtgggaaggatacagcctgctg
tacgtggagggacaggaaaaagctcacaaccaggatctcggtcagccagggtcatgcctc
cctcgcttcagcaccatccccttcctctactgctcccccaacgagatctgctactacgcc
agccgcaacgacaaatcctactggctttccaccaccgcgcccataccaatgatgcccgtg
tccgaggggcagatacaaccttacatcagcaggtgttcagtttgtgaggctccatctctg
gctgtggctgtgcacagtcaggacatgaacattcccacctgcccacccggctggaggagt
ctctggatcgggtattccttcctgatgcacacggcggccggcgctgagggcggcggccag
tccctggtgtcccctggctcctgcctggaggatttccgcgcgacgccgttcatcgagtgc
aacggcgccaaaggatcctgccactactttgccaataagtacagcttctggctcaccacc
gtgaatgcaggccaggagttcctgtactcacccaatcaggagacactgaagggaggtcag
gagcgctccagggtcagccgctgccaagtctgcagcaagttcttgtag
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integrated database retrieval system
