Solea senegalensis (Senegalese sole): 122765946
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Entry
122765946 CDS
T07721
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04382
Cornified envelope formation
ssen04510
Focal adhesion
ssen04512
ECM-receptor interaction
ssen04518
Integrin signaling
ssen04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122765946 (col4a5)
04518 Integrin signaling
122765946 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122765946 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122765946 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122765946 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssen04147
]
122765946 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122765946 (col4a5)
Exosome [BR:
ssen04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122765946 (col4a5)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122765946 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122765946
NCBI-ProteinID:
XP_043876378
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All DBs
Position
LG3:971008..1005544
Genome browser
AA seq
1676 aa
AA seq
DB search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NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcgactcttcatcgtcctctgtgtcgcggtgcgacacgcacactctgcggcc
tgtaacggatgtgcaggatctaaatgtgactgcagaggagtgaaaggagagaagggtgaa
cggggtttcccgggtctcaccggacaaccaggggtgccaggtttccccggacctgaggga
ccaatcggaggcagaggagagaagggcagtgatggacctcaaggacctggaggtccaaaa
ggaattagaggtcctcctggattaccaggattcccaggaactccaggacttcctggtctg
ccgggtcaggacggacctccgggcccgagaggagtggcgggctgcaacgggacaaagggt
gaacgaggtttccccggggcaggaggaattcccggaacgccgggattattgggtccaccg
ggtctgcccgggccaaagggagacccaggtgacatcatctccaccaatcggtttggacag
aaaggaggagtgggattaccgggattaccaggagctcctggattaccaggtcctcctgga
ttacaaggtccaagtggtcctccaggacccacaggatacgagggtcgtccaggtcctcct
ggttctcctggacctaagggaaacatgggtttgaacttccaaggacccaaaggagataag
ggtgaacagggtttaccgggacctcctggtcctccaggtcaggtgggagagcagcagcga
ccgccagtgcacgtgattcagagaggagacaagggagaccctggacctccaggcccccga
ggtgatccaggttttccgggcgctcctggtccatctggtggtcagaaaggagaaaagggt
gaactgggcgaagcaggaaaacgaggaaaaccaggcaaagacggcgaccctggtcctcca
ggtttccccggcggcaaaggagaccaaggttctccaggtgttccaggcagagacggagaa
agaggtctaaaaggagatcgtggatatccaggtccaccaggagtggtgatcggtggtcag
accggaggtcgcgttggtgataaaggtgaacctggtttcccgggatcccccggacttaaa
ggagaacgaggaccaggaggtttaactggacctcccggatcaccaggactcccagccatc
ggcggcagcggtcagcctggaacccctggctaccccggagagagaggtcagaagggagac
actggcgacccaggcatcgctctgccaggaccaccgggacgtccaggaacacccggtcca
cagggtcaacaaggacctcctggacctccgggcttttcctccggacagaactgcgtcggt
ggagaacccggacgccccggtgtgcagggagagcgaggttacccgggagagagggggcag
aaaggtaataaaggcgacacctgtgtcaactgctttggtggaaccagcccaattccagga
ccacaaggacctgctggaccagccggactccccggaattcccggcagcccaggaaccaaa
ggagacagaggatatccgggatcacctggtcctctcggccaacctggttcccccggtcct
caaggttctccagggttcccaggagagaagggagacccaggagatgccatcacagtcagt
ggtgtaaggggggaaaagggtgactctggtttccctggatcacctggtctaccaggtctg
gatggtcgccctggacgcgacggacagcctggacttcctgggcccaaaggaactcctgga
tcgctgctggtgaaaggagaacgaggagtccctggtgagtcaggtgctcctggtattcca
ggggacaggggtcccccaggttcccccggctttggacctccaggggcctcaggagagaaa
ggtgtccagggtgtctctggaagacctggagctcctggttttccaggtactaaaggtgaa
ccaggcctgacggtggcagagaaaggattaccaggaccaagaggactggatggcgagcct
ggattgcccggttcaccaggtagcccaggttcaccaggacagcctggttttcctggtaca
ccaggggcaaagggtgaccctggactcccaggcattggacttcctgggcaaccgggtact
aaaggattcccaggtattcctggacagccaggatctcccggtggatctggtagaccagga
gtcgatggactccctggccagcctggaattcctggacctaagggtgagcctggctttgga
cttcccggcccatctggtttaccaggagttcctggatctaaaggtttccctggaccaaag
ggagatcctggttaccctggcggccctggttcacctggaagatctggactagatggtgga
ccaggatcaaaaggtgaacctggtactcctggcatccctggagctcgtggtccacctgga
agcccctccattggttcgttgggtacaccaggcgctcctggacctccaggcccagtagga
ccaccaggttaccctggatcaaatggacagaagggagacccaggccctccaggtcttgat
atcccaggtttgccaggagaaagagggactcctggtattcctggttctccaggacctggc
ggaacccctggacctcctgggggacctggacgggatggcctgcctggactgtcaggtcag
aaaggagacatgggtccaatgggatctccaggaccatctggaggaccaggaggcccagga
ggaccagggggccctggaaataagggtgaacctggattcccaggaagagacggatcaccc
ggtggtcctggccttaaaggagagaggggtgagaatggtgttcagggacctccaggtttg
tctgtgacaccagtgaccacaaaaggtgacaaaggagactcaggactaccaggggcacca
ggttttccaggtcagaaaggcatctctggtcttcctggggatcctggcctgccaggatca
gatggtcgccctggactcccgggaccatcaggtcctaagggagatcctggtataccagga
agcccaggcggccctggtggaccaggagcaaaaggcagcatgggagaaatgggatttcca
ggaccatcagggcagaagggtctaccaggtcaaccagggaggtcagggccatcaggacaa
ccaggatcaccaggttttcctggagccaaaggtgaaccagggtctgctggggttggacca
cctggaatagctggacaaaagggtgagccaggccagccagggttcccaggaagtccagga
ctcaagggaggtccaggatcatctggtctcccaggtttaccgggaggaccaggtcccaaa
ggagatcctggcctcccaggattccaaggttctcctggtatcccaggtcccaagggtctc
gatggtggaccaggtgcaccaggtctcaatggagctcctggtagaccaggagagtctagc
cgaccaggatcacccggtttgccaggagagaagggtcaggcaggtcgtgacggtatccca
gggcctgctggaatcaaaggagagccagggcttcctggttttggtggtcctggtccttct
gggcttcctgggttgccaggtgctaagggagacccaggtcttcctggtccctctgggagt
cctggtttccctggtcctaaaggagatgctggctttcctggaaacccaggttctccagga
aacatcggtcctcctgggcctcaaggactggctctgcagggccctaaaggacaatcaggt
ccccctggaccacctggaagagcaggtccctcaggtcctgcaggtcctcagggtcctcag
ggtgcacgtggaccagcaggaagtggcggcatcaagggagagaagggtatttccggcgct
ccaggtcagccgggcttcccgggacagaagggagagtttggtactccaggattccctggt
ccttctggtcttcctggtagtcctggtataaaaggagacattggtctgcctggtgttcct
ggattccccggaccaaagggagactcaggtctccccggtggaaatggtcttccgggagca
cctggagacgagggacagcgtggccttcctggtgaccctggcatagcttcagctcccatt
gttgtgaagggggagcagggacctcctggtcctccaggcctgctcggtcctcgtggacca
cctggtgcttctggacgtgaaggactcccaggtcagcctggaaaccctggagaccctggt
ctggaaggtcctccaggattcagcggcccacctggtaggaagggagatcctggacccgcc
ggtcagcccggtcagcgtggcttccctggtcctcctggttcagatggtcctcaaggatct
cctggtgttccaggaacggcctctgcagcccatggattccttgtcacccgacatagccag
agtcaggaagttcccttctgtcctgatggaacaagccccatctatgacggatactccctg
ctgtacgtgcagggcaacgagagagctcatggacaagaccttggcacggcggggagttgt
ttgcgcaggttcaccaccatgcccttcatgttctgcaacatcaacaacgtctgcaatttc
gcttcccgcaacgactactcctactggctgtccactcctgagcccatgacaatgtccatg
gcccccatcaccggagagggtatcaagccttacatcagcaggtgtgcagtgtgtgaagct
cccgccatggtgatcgcagtccacagtcagaccatccaaattccttcatgcccgacacaa
tgggatactctgtggataggatactccttcatgatgcacaccagtgcgggagcagagggc
tccggtcaggccctggcctcccccggctcctgcctggaggagttccgtagcgcccccttc
atcgagtgccacggcagagggacgtgcaactactacggcaactcctactccttctggctg
gcgactgtagaacaatctgagatgttcaggaagcctcagtcggagaccctgaaggcaggg
aacctacgaacccgcgtcagccgctgcgtggtctgcatgaagaggacgtaa
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