Solea senegalensis (Senegalese sole): 122766512
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Entry
122766512 CDS
T07721
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03020
RNA polymerase
ssen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122766512
09124 Replication and repair
03420 Nucleotide excision repair
122766512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122766512
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122766512
Enzymes [BR:
ssen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122766512
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122766512
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122766512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
122766512
NCBI-ProteinID:
XP_043877376
LinkDB
All DBs
Position
LG3:12832140..12843722
Genome browser
AA seq
1963 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVCFITKIIKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQENEEDLTKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATVKPSHKAFEKKFRFDCTNERALRRILQEDVVKDVQTNAHVQGVLEREFDRMKED
RDTLRTIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVHELSKKLVI
VNGDDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPXPPTSPNYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSRLTPDLPTYTPTSPKYSPTXPTYSPTSPKYS
PVSHILPTSPKGSTYSPTSPLYSPTSPTYSPAISPEDSDEENN
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctgatcaagagagttcaa
ttcggcgtcctcagcccagatgagcttaaacggatgtctgtcacagaaggggggattaaa
taccccgaaacaacagaaggaggacgtcctaaacttggtggcctcatggacccaagacag
ggtgtcattgaaagaactggacgatgtcagacatgtgcaggcaacatgacagaatgtcca
ggtcactttgggcacatagaactggcaaagccagttttccacgtttgctttattacaaag
ataataaaggttctccgatgtgtctgcttcttctgttccaagctattagtggattcaaac
aatccaaaaatcaaagacatcttgataaaatctaaagggcagcccagaaagcgtttgaca
cacgtctatgagctgtgcaaaggaaaaaatatatgtgaaggtggggaggaaatggataac
aaatttggagtggaacagcaggagaatgaggaggacctcaccaaggagaagggtcacggt
ggctgtgggcgctaccagccacgcatcagacgcactggcttggagctgtatgcggaatgg
aagcacgttaatgaggattcacaggagaaaaaaatcctgctgagtcctgagcgtgtacat
gagatctttaagcgcatctcagatgaagaggatgttatcctgggcatggaccccaagttt
gcccggcccgaatggatgattgtgactgtgttgcccgtgcctccactggctgtaaggcct
gctgtagtaatgcaaggatctgctcgcaaccaggatgacctgacccacaagctggccgat
attgttaaaatcaacaaccagctgagaagaaacgagcagagtggtgcagcagctcatgta
atagctgaagacgtcaagttgcttcagtttcacgtcgccacaatggtggacaatgaattg
ccaggcctgccaagggcaatgcaaaaatctggccgtcctctgaaatccataaagcaacgc
ttaaaaggaaaggaggggcgagttcgaggtaacctcatgggcaagcgtgtggacttctca
gcccgaactgtcatcaccccagaccccaacctgcaaatcgatcaagtgggcgtgccacga
tccatcgcagctaatatgaccttcccagaaatcgtcacaccatttaacattgacagactg
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcatacgcgac
aatggagacagaattgacctccgcttccaccccaaacccagtgaccttcacctgcagata
ggctacaaggtggaaaggcacatgtgtgacggtgacattgttatcttcaaccggcaaccc
acactacataaaatgtctatgatggggcacagggttcggattctgccctggtccacattt
cgacttaatctcagtgtcaccaccccatacaatgctgactttgatggggatgagatgaac
cttcacctgcctcagtccctggagaccagggcagagattcaggagctggccatggtgcca
cgtatgattgttacgccccagtccaacagacccgtcatgggtattgtgcaggacactctc
accgctgtacgcaaattcacaaagagggacgtcttcttagagaggggtgaagtcatgaat
ctcctcatgttcttgtccacctgggacgggaaaatgcctcaaccggccattctcaaacca
cgtcctctgtggacaggcaagcagatcttcagtctcatcattcccggacacatcaatgtc
atccgcactcacagcactcaccctgacgatgaggacagcggtccatacaaacacatctca
cctggggataccaaggtgatagtggaaaatggtgagttgatcatgggcatcctgtgtaag
aagtctcttggaacgtcagctggctccctcgtccacatttcctacctggagatgggtcat
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactccatcgctgatgccaaaacatacctcgacatt
cagaacaccatcaagaaagccaagcaggatgtgatagaggtcattgagaaagcccacaac
aatgagctagagccgacccctggtaacacactgagacagacctttgagaaccaggtgaat
cgtatcctcaacgacgcccgtgacaaaacgggatcgtccgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtcgctggttccaagggttcaaagattaacatttca
caggttattgctgtggtggggcaacagaacgtggagggtaaaagaattccctttggcttc
aaacaccgcacactgccccacttcatcaaagatgactacggtcctgagagtagaggcttt
gtggagaactcctacctggccggcttgacaccaacagagttcttctttcacgccatggga
ggcagagagggtctgattgatacggccgtcaagactgccgagactggttacatccagcgt
cgtctcatcaaatctatggagtctgtaatggtgaagtacgatggcacagtgcgtaactcc
atcaaccaggtggttcagctgcgctacggtgaggacggcctggcaggagagaacgtggag
tttcaaaatctggcaacagtcaaaccctcacacaaggcatttgagaagaaattccgattt
gattgcacaaatgagcgcgcactgaggcggatcctgcaagaagacgtggttaaagacgtg
cagaccaacgctcatgtacagggcgttttggagagggagtttgataggatgaaagaggac
agggacacccttcgaacaattttccccactggagacagtaaggttgtgctgccatgcaac
ctggccagaatgatctggaacgcccagaagatctttcgcatcaacactcggaccccaaca
gacctgaatccactaagagtagtcgagggagttcatgagttgagtaaaaagctggtgatt
gtgaatggggacgacccactgagcaaacaggcccagcagaatgccactctgcttttcaac
atccacctgcgctccacgctctgctccaagcgcatgacggaggagttccgcctttcaact
gaggctttcgactggctgctgggagagatcgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggttggagctctggctgcccagtcgctgggagagccagccactcaaatg
actctaaacactttccactacgccggtgtatcagccaagaacgtaacacttggtgtgcca
cgtctaaaggagttgatcaacatctccaagaggcccaagacaccttcacttaccgtcttc
ctgctgggtcaggcagcacgtgacgctgagagggccaaggacatcctctgtcgactagag
cacaccacactgcgaaaggtgactgccaacactgccatctattacgaccccaaccctcag
aacactgtggtggccgaggaccaggagtgggtgaatgtgtactacgagatgcctgacttt
gatgtgacacgcatttccccttggctgctgcgcattgagctggaccgcaaacacatgact
gaccgcaagctgaccatggagcagattgcagagaagatcaacgcaggttttggagatgat
ctgaactgtatcttcaacgacgacaatgcggaaaagcttgttttgcgaatcagaatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtagacaaaatggatgacgat
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaataagaaaaagatcataatc
acagaagatggtgagttcaaggccctgcaggagtggatcctcgagacagatggagtgagt
ctcatgagagtgctcagcgagaaggacgtggatcccgtcagaaccacctccaacgacatt
gtggagatcttcacggtcttgggaatcgaggctgtgcgaaaggctctggagagggagttg
taccacgtcatctcctttgacggttcctacgtcaactaccgtcacttggctctgctctgt
gacaccatgacgtgccgcggtcacttgatggccatcacgcgtcacggcatcaaccgtcaa
gacacagggccactgatgaagtgttccttcgaggaaacggtggatgtgttgatggaggca
tcatcccatggagaaagtgaccccatgaaaggtgtgtcggagaacatcatgctcggccag
ctcgctccggctggtacaggctgctttgatttgctcctagatgctgagaagtgtaaatac
ggcatggagattcctaccaacatacctggcatcagcgtggctggacccactggaatgttc
tttggcacagtgccgagccccatgagtggtatgtcgcctgccatgacaccatggaacaca
ggagcgacaccagcctacggtgcctggtctcccagtgttggaagcggcatgacccctggg
gcagcaggtttctctcccagtgcagcatcagatgcaagtggcttctctccaggctactcc
ccagcctggtccccgactcctgggtctccaggatctccaggaccagccagtccatacatc
ccatctccaggtggagccatgtcacccaactactcacccacctccccagcctacgagcca
cgctcccctggaggctacacccctcagagcccgggctactcccccacatccccctcctac
tccccgacctcccccnctccccccaccagccccaactacagcccagcgtctccttcctac
tctcccacctcaccaagctactccccaacttctccgtcttactcacccacatctccctct
tattcgccaacatccccatcctactcccctacgtctccctcttactcccccacctctccg
tcctactctccaacctcgccgagctacagcccgacgtcgccaagctatagcccaacgtcg
cccagctactctcccacctcgccttcttactcgcccacttcaccttcctattctcccaca
tctccctcttactcccccacctccccctcatactcccccacatctccttcctactcgcca
acgagtccaagctacagccccacctcgccaaactacactcccacctctcccagttactcc
cccacctccccctcttattccccaacatcaccctcttactccccaacctctcccaactac
accccgaccagccccaactactctcccacctctccatcgtattccccaacctctccatcc
tactccccttccagtccacgctacaccccacaatcccccacctacacacccagctcaccc
tcttacagccccagctctccttcctactcccccacctcccccaaatacaccccgacttca
ccctcatacagccccagctccccagagtacactcccacgtctcccaagtattcccctact
tctccgaagtactccccaacatcgcccaagtactcccctacttctcccacttactcccca
acaacgccaaaatacagccccacctcccgacttactcccgacctcccgacctacacacct
accagccccaagtactcccccaccntcccgacttactccccgacctcacccaagtattca
cccgtctcccacatactgccaactagtcctaaaggctccacttacagcccaacatcgcca
ttatacagccccacctccccgacatacagcccagccatcagcccagaggacagtgatgaa
gagaacaactga
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integrated database retrieval system
