Solea senegalensis (Senegalese sole): 122766761
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Entry
122766761 CDS
T07721
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03008
Ribosome biogenesis in eukaryotes
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122766761 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
122766761 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122766761 (xrn1)
03009 Ribosome biogenesis [BR:
ssen03009
]
122766761 (xrn1)
03016 Transfer RNA biogenesis [BR:
ssen03016
]
122766761 (xrn1)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122766761 (xrn1)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122766761 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
122766761 (xrn1)
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-60S particles
RNases
122766761 (xrn1)
Transfer RNA biogenesis [BR:
ssen03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122766761 (xrn1)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122766761 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
122766761
NCBI-ProteinID:
XP_043877854
LinkDB
All DBs
Position
LG1:complement(18309139..18329497)
Genome browser
AA seq
1711 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTEFMARLQEQLKYFVHNKLSTDRLWQNVRVYLSGHETPGEGEHK
IMEFIRSENSKPSHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSPLRNHIGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHISHDALPLLYKTYISVLPSVGGYLNENGHLNLRNFEKYMEKLAEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGRAAEKEAACKRNKTEDSSLCLAALTSSDGITGGGKMADDEEEED
DMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSWYYPY
HYAPFLSDIRNIAHLKLTFDLGKPFMPFEQLLGVLPAASAELLPQAYRHLMTSENSTIIE
YYPVDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPCNYKLTKEEKSRNRHTECAVYSY
DGEADFTYTSLLPQLFPDIIHCHVRFTDIPMDAWVVPLDHVSRRLDRSALYFCGFPSLQH
IKHKFYKKKSGVVVFQQSSRGENMMLEILSRDEEEMICDDVAAQVLGKSVFVNWPHLEEA
RIIAVSDGDTKFYLQEPAGVQKVYDRPTSPPPTKVTCLSDKEQKEWVKDVQGITEHYMKR
KGILVNETSVVLYGQLLTGRKFVPKANGAVELEKQWSKQVLPFALQTIVKDIKAFFSALT
CFKSLDDLFPQATTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFNVPHEPQMESLIQNQ
HKYCVRYSPGYILASHLGITSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNKKNE
EVPGYTKRTEKEWLYSSAVEELLAEYLERFSEVFNTVARNSHDDVFYEDDIWPGEDQNGA
EKVSEITSWLKSHPVSSISRTSCDLQVLDTAIVEKIEEAVEKTKVKKNTKKVRVTVKPHL
LFRPLEQQQGVVPDPDAEYRLFDRVVNVRESFTVPLGLRGTVVGIKGADREAEVLYEVLF
DDDFAGGLSIRCPSPRGYRLPPCALINLSHGARADHTSRKLTAIVKPQPVAGANFHSHRQ
LAGLNHSPRSPFIPTQHNNKHGNRNSPSKGPILKQQAKSKEEYGNAWQTLQNVGPPNKPP
AHWQNQDGYSQPGKNQHTPSNKAAPVGGIRLLKKNENAEALFPPHNTPTKASTEFEDLIA
SLKISKGSQQTPPLPVPPQAPTSETDGPLSPQSFAMKGTMVLKEMLKIDSSSPGSPPVQD
TANSTPSGGQQQNRRRSSKKLAAKMNSPHGDMPLAPPASAPPTNLPNALLTNKVSELACV
CVGLGMAPPEFSAIRNRQGLVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSVG
SGFPLPPPLYPAMGHIRPPPMGAMTRVFNQQGGLLLPHQGYGPPPMWGMPLPPHHQNQPF
FGAAGTFPGAARPQPAATTVPIGSHNQFIPLQVTKKRVSANKKNQETREFYSAAHTVARN
QSQKCQNQPFGQSHVQSEPQSGQVEQPHPHAANSSTSLSCTSLADGAMTTAAPQTPPRQN
VPATGHTPGSASKRRHRKLAVNFEAAKVSEG
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccgaaattttaccgatggatctcggagcgctacccgtgtctcagtgaagtt
gtcaaggaacatcagatcccagagtttgataatctctatctggacatgaatgggattatc
caccagtgttcccacccaaacgacgaggatgttcactttcgcatttctgaggaaaagatt
tttgcagacatcttccactacctggaggtgctgttcaggatcatcaagcctcgcaaggtc
ttcttcatggctgtggatggtgtggcaccaagggcgaagatgaaccagcagagagggagg
agattcaggtctgccaaagaagcagaggataagataaaaaaggccctggacaaaggagag
gtccttcctacagaggctcgcttcgattccaactgtatcactcctggtactgaattcatg
gcgagacttcaggagcagctcaaatattttgtccacaacaaactctccactgacagactg
tggcaaaatgtcagagtttacttgtctggtcacgagacaccaggggaaggagaacataaa
atcatggagtttattcgctcggagaactcaaagccgagtcatgaccccaacacccgtcac
tgcctttatggcctggatgccgatctgataatgttgggtttaaccagccatgagccaaac
ttctccctgctcagagaagaggtccgcttcggaggaaagaaatctcagaaaaggataaca
gctccagaggagacaacatttcacttacttcacttgtctctgatgagggagtacatcgac
tatgagttctctccgctcaggaatcacattggttctgattatgatttggagcgaataata
gacgactggatcctaatgggcttccttgtgggaaacgatttcatccctcatctccctcat
ttgcacatcagccatgatgctctgccactgttgtacaagacctacatcagtgtactaccc
agtgtgggaggttatctgaatgagaatggccatctaaacctcagaaactttgagaagtac
atggagaagcttgcagagtttgaccgggaacattttagcgaagtgtttgttgacttgaag
tggtttgagagtaaagtcggtaacaagtacttgaatgaggcggcgggacgagcagcagag
aaggaagctgcttgcaaacgtaacaagactgaggattcttccctctgcctggcagctctg
acctcatcagatggaataaccggaggaggaaagatggctgacgatgaagaagaggaggac
gacatgtttgaaacggagttcagacaatacaaacgcacctactatatgaccaagatgggc
gtggacgtcgtgtctgacgagtttcttgccaagcaggccaagtgttacgtggaaggcatc
cagtggattcttcattattattaccacggagttcaatcctggagctggtactacccctac
cactacgcacccttcctatctgacatcagaaatatcgctcacctaaaattaaccttcgac
cttggaaaacccttcatgccctttgagcagcttttgggagtcctgcctgctgccagtgcg
gagctgctgcctcaggcttacaggcacctgatgaccagtgaaaattcgaccatcattgag
tactacccagttgacttcaaaacagacctgaatggcaaacagcaggagtgggaggctgtg
gtgctcatccccttcatagatgagcggtgtttactagcagccatggagccctgcaattac
aaactgactaaagaggaaaaatccaggaatcgacacacggagtgtgccgtctactcctac
gacggcgaggctgacttcacatacacgtcgttgctgcctcagctgttccccgacatcatc
cactgccacgtcaggtttacagacatccccatggacgcctgggtggtgcctttggaccat
gtcagcaggagactggaccgttcagctctgtacttctgtggcttcccttctctgcaacac
atcaagcacaagttttataagaagaagagtggcgtggtcgtgttccagcagagcagcaga
ggagagaacatgatgttggagatcctttcccgagatgaagaagagatgatatgtgatgat
gtcgctgcacaagtgctgggcaagtccgtgttcgtgaactggcctcatctagaggaagct
cgcatcattgcagtgtcagacggagacaccaagttttatctccaggaaccagcgggcgtc
cagaaagtgtacgacaggccgacgtctccccctcccaccaaagtcacctgtctgtctgac
aaggagcagaaggagtgggtgaaagatgtccagggaatcactgaacattacatgaaaagg
aaaggcatcttggtgaatgagacgtctgtggttttgtatggccagctgctgacaggaagg
aagtttgtccccaaagccaatggagccgtggaactcgagaagcagtggtccaaacaagtt
ctcccttttgccctccagaccatcgtcaaggacatcaaggccttcttctctgcactgacc
tgttttaagagcttagacgacctcttcccccaagcaactacggtcttcatggtgggaaac
ccgtactacggtgccatgggagaggtgcaggattccagcgacgtcattaaagacggccga
gtacgtgtcgtctttaacgtgccacacgagccgcagatggagtccctgatccagaatcag
cataaatactgtgtgaggtacagtcctggttacattctggcgtctcatctcggcattacc
agctacctcgtatcccgcttctctggaagcatcttcatcggcagaggctctaagaagaat
ccttgtggggagcaaaaggccaacgttggcttgaacctaaagttcaacaagaagaatgag
gaggttcctggatacaccaagaggactgaaaaggagtggctctactcttctgctgtggag
gaactgctggctgaatacctggagagattttctgaggttttcaacacagtggccagaaac
agccacgatgatgttttctatgaagatgacatctggcctggagaggaccagaatggggca
gagaaagtgtctgaaatcacgtcatggctgaaaagtcacccggtcagctccatcagtaga
acgtcatgtgatctacaggtgctggacaccgccattgtggaaaaaatcgaagaggcagtg
gagaaaactaaggtgaagaagaacactaagaaagtccgcgtgaccgttaagcctcatctg
ctcttcaggccgttggagcagcagcagggtgtggttccagacccggatgcagaatatcgc
ctgtttgacagagtcgtcaacgtcagggagagtttcaccgtcccactgggactcagggga
accgtagtcggcatcaaaggagccgaccgtgaggcagaggttctatatgaggtcctgttt
gatgatgattttgctggtggtctcagcatcaggtgtccgtcaccgcgcggttaccgcctg
cctccgtgtgctctcatcaatctctcccacggagcccgtgcggatcacacctcccgcaaa
ctcaccgccatcgtcaaacctcagcccgttgctggcgccaacttccactcacaccgccag
ctggccggcctcaaccattcaccacgctcacctttcatacccacacagcataacaacaaa
catggcaacagaaactctccctctaagggtcccatcctgaaacaacaggccaagagtaaa
gaggagtatggtaatgcgtggcagacgctacagaacgtgggccctcccaacaaacctcct
gctcactggcaaaatcaggacggatactcgcagccagggaagaaccagcacacaccatcc
aacaaagctgctccagttggcggcatcaggctgttgaagaaaaacgaaaatgcagaggcc
cttttcccaccacacaacacgcccactaaggcttcgactgagtttgaggatctcattgcc
agccttaagatctctaaagggagccagcaaaccccacctcttcccgttcctccacaggcg
cccaccagcgagaccgacggcccactgtctccacagtccttcgccatgaagggaaccatg
gtgctaaaggagatgcttaagatcgacagttccagcccaggaagtccacctgtccaggac
acggccaactccaccccctctggaggtcagcagcagaacaggagacgatcgtccaagaaa
ctagcggcaaagatgaactcgccacacggcgacatgccattagctccgcctgcatctgct
ccacccaccaatctccccaacgctttgctgaccaataaagtgtcagagctggcttgtgtc
tgtgtgggcttaggcatggcaccgcccgagttcagcgctatacgcaacagacagggtctc
gtcgtgtgccaggtgaagctgtccaatgggttgatggttcacggaccacagtgccagtct
gaaaatgatgccaaggaaaaagctgctttctttgcccttcagagactgaactcagttgga
tcgggcttcccgctcccacctcctctataccctgcgatgggtcacatacgacctccacca
atgggagccatgactcgggtctttaaccaacaaggaggtttactgttgcctcaccagggt
tacggtcctccccccatgtggggaatgccgctgcctccgcatcaccagaaccaaccgttt
tttggagcggcgggaactttccccggcgccgcccgcccccagcctgcagcgacgactgtg
cccatcggctcacataaccagttcatccccttacaggtcactaagaagcgagtctcggcc
aacaagaagaaccaggaaactcgcgagttctacagcgccgcccacaccgtggccaggaac
caatcgcagaaatgccagaaccagccgtttggccagtcacatgttcagagtgagcctcag
agcgggcaagtggagcagccacaccctcacgctgccaacagcagcacctccctgtcctgt
accagcctcgccgacggagccatgacgacagcggccccgcagacgccacccagacaaaac
gtcccggcaacgggccacacccctggctccgcctccaagaggagacacaggaaactggcg
gtcaactttgaggctgctaaagtctctgaaggctga
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integrated database retrieval system
