Solea senegalensis (Senegalese sole): 122767664
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Entry
122767664 CDS
T07721
Symbol
hcfc1a
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1a
KO
K14966
host cell factor 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03083
Polycomb repressive complex
ssen04980
Cobalamin transport and metabolism
ssen05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122767664 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
122767664 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122767664 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssen01009
]
122767664 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssen03036
]
122767664 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
ssen03029
]
122767664 (hcfc1a)
Protein phosphatases and associated proteins [BR:
ssen01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122767664 (hcfc1a)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
122767664 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
122767664 (hcfc1a)
MLL-HCF complex
122767664 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
122767664 (hcfc1a)
Mitochondrial biogenesis [BR:
ssen03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122767664 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
122767664
NCBI-ProteinID:
XP_043879020
LinkDB
All DBs
Position
LG4:complement(4175821..4192701)
Genome browser
AA seq
1748 aa
AA seq
DB search
MSAPGSAVSGTTASVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGVLPPPRESHTAVVYTEKISRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVSGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDNMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAVASPAMSTAPSL
PINSPKSPAPAAAAPSAQSFPQTAVLKVAAQHSATGASVVTVRPSQPGKSPVTLTSLPPG
VRMVVPAQTTQGSPIGSSPQMSGMAALAAAAAATQKIPPSSAGTVLNVPAGATILKTVSN
PATRMLKTAAAQVGTAAGSSPTTTRPIITVHKSGAVTVAQQAQVVTTVVGGVTKTITLVK
SPLTMGSSGTLISNLGKMMSVVQTKPVQTSAVTGQASTNPLTQIIQTKGPLPAGTILKLV
TSADGKPTTIITTSQAGGTGNKPTILNISGVSPTTTKQGTTIIKTIPMSAIMTQPGATGV
TSSAGMKTPITILTTKVMTTGTPGKIITAVPKLATAAGQQGLTQVVLKGAPGQPGTILRT
VPMSTMGGVRLVTPVTMSSVKPNVTTLVVKGTTGVTTLGTVTGTVSSSLTGGAGDNSSAS
LVTPITTLGTISTLSSQVISPAAITVSAAQTSLTSASTLPSSTITVQNQPTQVTLITTPS
GVEAQPVQDLPVSILASPTSEQPSSTEAGEGSGTVTLVCSNPPCETHETGTTNTATTSSA
TIGAGRVCSNPPCETHETGTTNTATTASSNMSALRVCSNPPCETHETGTTNTATTASSNM
GAVQQLCSNPPCETHETGTTNTATTASXNMGGVNGVLQPACETHETGTTNTATTASSNMG
GNXVCSNPPCETHETGTTNTATTASSNMGGVQQVCSNPPCETHVTGTTNTATQASSNMNA
GQTDTTQRVFSNPTCETQGTGTTNTPSTATSSMGGEQTSTTAGLVQRVCSNPPCETHETG
TTNTATTATSSMETGEGTAAQQSEEGTEGTSSTEAVATTATTSMVTTTQGRAITTVTQST
PAPGPSVPSISSITEGVSTVASSTEEPMQTEEAASAEAAPTEASTAMETQAEGEAATATD
LNLPSELMSEGQGATLMVTGLSDEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAV
MNESESVGDSQQPTTIPIMLTQQELAALVQQQQLQEAQAAAQQAAVDTSLPTEGLAPADS
LNDPSVESNGHNEMAAAVTSAVVSLLPRTTAETLAPSSTFAPSVAVASPAKMQAAAALAE
VANGIEGEKQAPQPTPVKPIVKKENQWFDVGIVKVTNMVVTHFYMPTDESQGDDDSGTMP
DYSQMKKMELQPGTAYKFRVAGINACGRGSFSEISAFKTCLPGFPGAPCAIKISKSPDGA
HLTWEPPSVTSGKIIEYSVYLAIQSNQTAEAKASTPAQLAFMRVYCGPNPSCLVQSSSLS
NAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESGKDAASAKPAPKRPGTSPDTKVTG
PKKARTDQ
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggctccgcggtgtctgggaccacggcgtcggttctgcagccgcggtgg
aaacgggtcctcgggtggtccggtcccgttccccggcccagacatggtcatagagccgtg
gctataaaagagctcatggttgtctttggcggtgggaacgaaggcattgtggatgaatta
catgtatacaataccgcaacaaaccagtggtttatcccagcggtccgtggtgacatcccc
cctggttgtgctgcttatggttttgtctgtgatggcacaagattgctggtgtttggtgga
atggtggagtatggaaagtacagcaacgacctctatgaacttcaggctagcaggtgggaa
tggaaaaaattgaaagccaaaaacccaaagaatgggccccctccttgtcctcgtctcggc
cacagtttttcccttgttggtaacaaatgctacctgtttggtggattggccaatgacagc
gaggacccaaaaaacaacattcccagatacctaaatgatctgtacacacttgagcttcgt
gctggttccagtgtggttggatgggatattccaatcacttatggagttttgcctcctccc
cgtgagagccacactgctgtggtatacacagaaaagatcagcaggaaatctcgcctgata
atatatggagggatgagcggctgtcgtcttggagatctgtggacacttgatattgatacc
ctgacgtggaacaaaccatcagtaagcggcacagctccacttcctagaagtcttcactct
gccaccaccatcacaaacaagatgtatgtgtttggaggatgggttcctctggtaatggat
gatgtcaaggtggccacacatgagaaggaatggaagtgcactaacactcttgcctgccta
aatctcgataacatgtgttgggagacagtattgatggatacactagaagacaacatcccc
agggcccgtgctggccattgtgctgtggccatcaattccagactttatgtttggagtggc
cgtgatggttaccgcaaagcctggaacaaccaagtctgctgtaaagacctctggtacctg
gaaacagagcggccacatgcccccgccagggtacagttagtccgtgccaatacaaactct
cttgaggtgagctggggagcagtttccactgctgacacctatttactgcagctacagaag
tatgacattcctgcaactccagctgtagcctcaccagccatgagcaccgccccctccctg
cctataaactctccaaagagccctgcacccgctgcagcagcgccctctgctcagagcttc
ccacagacagctgtcttgaaagtagcagctcagcactctgcaacaggcgcgtctgttgtc
acagtacgccccagccagcctgggaagtcccctgtcactctgacatcacttcctccaggt
gttcgaatggtagtgcctgcccaaaccacccaaggatcgccaattggcagcagccctcag
atgagtggcatggcagctttagctgcagcagctgcagcaacacagaagatcccaccctcc
tccgcagggacggttctcaatgttcctgcgggtgccaccattctcaaaacggtcagtaac
ccagccacacgcatgctgaagacggctgcagcccaggtgggcacagcagccggttcctcg
cccaccaccaccagacccatcatcactgtgcacaagtctggtgcagtcacggtagcccag
caggcacaggtggtaaccactgtggtgggaggagtcacaaagaccatcaccctggtgaag
agtcccctcaccatgggcagcagtggcactctgatctccaaccttggcaagatgatgtct
gtggtacaaaccaagccagtgcagacgtcggctgtcacaggccaggcttccactaaccct
ctcacacagatcatacagacaaagggtccgctcccagcgggaaccatcctgaagctggtg
acctctgcagatggcaagcctacaaccatcatcaccacttcgcaggcaggaggcacagga
aacaagcccactatcctcaacatcagtggtgtttctcctaccaccacgaagcagggcacc
acaatcattaagactatccccatgtcagccatcatgacgcagcctggagccacaggtgtg
acgagcagtgcaggcatgaaaacgcctattacaattcttactacaaaggtgatgaccact
ggaactcctggtaaaatcatcactgcggtgcccaaacttgctactgcggccggccaacaa
ggactgacgcaggtggtcttgaagggtgctccaggacaaccaggaactatactgcgcacc
gtgcccatgagcacgatgggtggcgttcgacttgtcacacctgtgactatgtcgtccgtg
aagccaaatgtcaccacactcgttgtcaaggggactactggtgtcaccacccttggaact
gtcactggcacagtctcctcaagccttacaggaggtgcaggggacaattccagtgcctca
ctggtcacccctatcaccacactaggaaccatttctaccctgtccagccaggtaatcagc
ccagctgccataactgtgtcggctgctcagaccagcctgacctctgcctccacactgcca
tcctctaccatcacagtacagaaccagcccacacaggtgacactgatcacaactcccagt
ggagtagaagctcaaccagtgcaggatttacccgtttctatcctggcttcaccaacctct
gagcagcccagttcaactgaggctggggaaggttctggcaccgtcaccctcgtctgctct
aacccaccctgtgaaacccacgagacaggaaccaccaacacagccactacctcctctgct
acgattggagctgggcgggtctgttcaaatccaccatgtgagacccatgaaacaggaacc
accaacacagccacaactgcgtcatcaaacatgtctgcactccgcgtgtgctccaacccg
ccgtgtgagacccatgaaactgggacgactaacacagcaaccacggcctcatcgaacatg
ggagccgtccaacagttgtgctccaacccgccgtgtgagacccatgaaactgggacaact
aacacagcaaccacagcctcantgaacatgggaggcgtcaacggtgtgctccaacccgcg
tgtgagacccatgaaactgggacaactaacacagcaaccacagcctcgtctaacatggga
ggcaacnaggtgtgctccaacccgccgtgtgagacccatgaaactgggacaactaacaca
gcaaccacagcctcgtctaacatgggaggcgtccaacaggtgtgctccaacccaccctgt
gagacccatgtgacaggaaccaccaacacagccactcaggcatcatcgaacatgaacgct
ggccagacggacaccacacagagggttttttccaacccaacctgtgaaacacaggggaca
gggactaccaacaccccatccacagcaacatccagtatgggaggtgagcagaccagcaca
acagcaggcctagttcagagggtgtgttccaacccaccttgtgaaacgcacgagacgggg
accaccaacacagccaccactgccaccagcagcatggagacaggcgaaggcacagcagct
cagcagtcagaggaaggaaccgaaggtaccagcagcacagaggcggttgctaccactgca
acaactagtatggtcaccaccacccagggcagggccattactactgtcacccagtctaca
ccagcgcctggtccctctgtaccgtcaatttcatcaatcacagagggagtgagtactgtc
gccagctctacagaggaaccaatgcagactgaagaggcagcatcagcagaagctgcaccg
acagaggcatctactgccatggagacacaagcagaaggagaagcagccacagcgacagat
ttgaacttaccctcagagctgatgtctgagggtcagggagccactctgatggtgacaggt
ctgtcagacgaggagctggctgtgaccgccgcagcagaggctgccgctcaggcagcagcc
actgaagaagctcaagccctggctatccaggctgtcctccaagcagctcagcaagctgta
atgaatgagagtgagtctgttggagatagccagcaacctaccaccatccccatcatgcta
acccagcaggagctggcagcactggtgcagcagcagcagctgcaggaggctcaggcagca
gcccaacaagctgctgtagacacaagcttacctactgagggcctggcccctgctgacagc
ctcaatgacccctctgtggagagcaatggacacaatgagatggctgcagctgtcaccagt
gctgtagtgtctctgctgccccgcaccactgctgagacactcgctccatcgagcaccttt
gcaccctctgtagcagtggcaagtccagccaagatgcaagcagcagctgctctagcagag
gtcgccaatggcattgaaggagagaaacaagctcctcagccaaccccagtgaaacccatt
gtcaagaaagagaatcagtggtttgacgttggaatcgtaaaagtgacaaatatggtcgtc
acgcacttctacatgccaaccgatgaatctcaaggagacgacgactctggcaccatgcct
gactacagccagatgaaaaagatggagctgcagcctggaacagcttataagttccgcgtt
gctggaatcaacgcttgtggtcgtggatctttctcagagatctctgcattcaagacttgc
ttaccaggtttcccaggagctccctgtgccatcaaaatcagcaagagcccagatggcgcg
cacctgacctgggagccaccatctgtgacttcagggaagatcatcgaatactccgtgtac
ctggctatccagagcaaccagacagccgaagcaaaggcctccaccccagcccagctagct
ttcatgcgtgtgtattgtggacccaacccttcgtgcttggtgcagtcgtccagcctctca
aacgcccacattgactacaccaccaagcctgccatcatcttccgcattgccgcccgcaac
gaaaagggctacggtcccgccacccaagttcgatggctgcaagaatccggcaaagacgcg
gcctctgcaaaaccagcccccaaaagaccaggcacctctcctgatactaaggttactggt
ccaaagaaagcaagaacggaccagtga
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integrated database retrieval system
