Solea senegalensis (Senegalese sole): 122767992 Help Entry 122767992         CDS       T07721                                  Symbol col2a1b Name (RefSeq) collagen, type II, alpha 1b   KO K19719   collagen type II alpha Organism ssen  Solea senegalensis (Senegalese sole) Pathway ssen04510   Focal adhesion ssen04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:ssen00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     122767992 (col2a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     122767992 (col2a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ssen00536]     122767992 (col2a1b) Glycosaminoglycan binding proteins [BR:ssen00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    122767992 (col2a1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  122767992 NCBI-ProteinID:  XP_043879524 LinkDB All DBs Position LG4:21661703..21700734 Genome browser AA seq 1491 aa AA seqDB search MFSFMDSRTVLLLLATQVCLLTVVRCQEEDDQEDAFSCLQDGQQYNDKDVWKPEPCRICV CDTGTVLCDEIVCEELKDCSKPEIPFGECCPVCAADPSTPIGVPGAKGQKGEPGDITDVV GPRGPPGPMGPSGEQGARGSRGEKGEKGGPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG GNFAAQMNSGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQS GPMGPRGPAGPPGKPGDDGEAGKSGKSGDRGPAGPQGARGFPGTPGLPGIKGHRGYSGLD GAKGETGAVGSKGESGSSGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGMSGPAGPP GPIGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP GAKGSAGGSGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDAGIAGFKGEAGPKGEIGPS GLQGAHGPQGEEGKRGPRGEPGTAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPS GASGAKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKGGPSGGAGEDGRPGPPGPQGTR GQPGVMGFPGPKGATGEHGKAGEKGLLGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ GPRGLPGTPGTDGTKGSIGPAGGAGAQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPE GASGKDGGRGLTGPIGPPGPSGPNGEKGESGPSGPSGAPGTRGAPGDRGETGPPGPAGFA GPPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPSGAT GFPGAAGRVGPPGPNGNPGPPGPAGSPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK GDAGEDGPPGLSGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGSGDR GPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSAGIKGDRGNTGPAGAPGAPGGTGAP GPVGPTGKQGDRGESGAQGPAGSSGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFT GLQGLPGPPGQSGDQGATGPSGPSGQRGPAGPTGPGGKDGANGMPGPIGPPGPRGRSGES GPAGPPGNPGPPGPPGPAGPGIDMSAFAGLGQTEKSPDPARYMRADQASGNLRQHDAEVD ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN METGESCVRSKPANIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT FLRLLSTEASQNLTYHCKNSVAYMDSAMGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED GCTRHTGQWGKTIIEYRSQKTSRLPIVDIAPMDIGGSDQEFGVDVGPVCFL NT seq 4476 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttatggattcccggactgtactgctgcttctagcaacccaagtctgtcta ttaaccgttgtgagatgtcaagaggaagatgaccaggaggatgcctttagctgtttacaa gatggacagcaatataatgacaaggacgtatggaaaccagagccttgtcgtatctgtgtg tgtgacactggaaccgtactgtgtgatgaaattgtctgcgaggagctaaaagactgctcc aaacctgaaatcccattcggagagtgttgccccgtctgcgcagctgacccatctacgcca attggagtacctggagctaagggtcagaaaggcgaacccggggacattactgatgttgta ggaccaagaggaccacctggcccgatgggcccatcaggagagcaaggagctcgcgggtca agaggagagaagggagagaagggaggccctggtccccgtggcagagatggtgagcctggt acccctggaaaccctggaccccctggacctccaggaccaaatggaccccctggacttggt ggaaactttgctgctcagatgaattctggatttgacgagaagtccggcggtgcacagatg ggagtgatgcaaggaccaatgggccctatgggacccagaggaccacctggcccatctgga tcacctggccctcaaggtttccagggcaacccaggagaggccggagagcctggacaatct ggccccatgggtccccgtggccccgctggaccccctggaaaacctggagatgatggtgaa gcaggaaaatctggcaaatcaggtgaccgtggacctgctggacctcagggagcccgtgga ttcccaggaactcctggcctacccggcatcaagggacacagaggttattcaggtcttgat ggagctaagggagagactggagctgttggttcaaagggtgagtctggctcttctggagag agtggcgcccctggaccaatgggaccacgtggtttgcctggtgagagaggtcgtcctgga cccagtggagccgctggagctcgtggaaatgatggcatgtctggccctgctggtccccct ggccctattggtccttcaggagctcctggtttccctggctctcctggctcaaagggagaa gctggccccactggtgctcgtggacctgagggtgctcaaggacctcgtggagaatcaggc acccctggatcaccaggaccttctggcgcttctggcaaccctggtactgatggtatccct ggagctaaaggatcagctggtggttctggtatcgctggggctcctggtttcccaggaccc cgaggacctcctgggcctcagggagcaactggacctcttggacctaaaggaacatctgga gacgcaggtattgcaggattcaagggagaggctggacccaaaggagaaattggaccaagt ggtcttcagggagcacatggcccacaaggagaagagggtaagagaggacctagaggtgag cccggtactgctggaccacttggacctcctggagagagaggatctcccggtaaccgtggt ttccccggtcaagatggtttggctggtcccaagggagccccaggtgagcgtggaccctct ggtgctagtggcgccaagggtgctggtggtgaccctggtcgtcccggagagcctggtctg cctggtgccaggggtctgactggacgacctggtgacgctggtcctcagggcaaaggtgga ccttctggaggtgctggtgaggatggacgtccaggaccccccgggccacagggaacccgt ggacagcctggtgtcatgggattccctggaccaaagggagcaactggtgagcacggcaag gctggagaaaaaggacttcttggagctcctggtctgagaggtctgcctggaaaagatgga gaaactggctctgctggcccccccggccctgctggtcctgctggagaaagaggagagcaa ggacagcctggaccctccggcttccagggtctgcctggaccccctggcccccctggtgag ggaggcaagcctggagaccagggtgtgcctggagaaggtggagctgctggtgctactgga cctagaggagagcgcggtttccccggagagagaggagctgccggacctcagggtctgcag ggacccagaggtctgcctggaactcctggaactgacggaaccaagggttccattggacct gctggtggtgctggagctcaggggccccctggcctgcagggtatgcctggagaaagagga ggtgctggcattcctggacctaagggagacagaggtgacattggagagaaaggacctgag ggtgcttccggcaaggatggtggcagaggtctcactggtcccattggtcctcctggtcct tctgggcccaacggtgaaaagggtgaatctggaccttctggtccttctggagctcctgga acccgtggtgctcctggtgacaggggtgagactggaccacctgggcctgctggatttgct ggaccccctggatctgacggtcaacctggaattaagggagaacagggagagtctggacag aagggagatgctggtgctcctggacctcaaggaccatctggtgccccaggacctgcaggt cctacaggcgtttttggacctaaaggtgctcgtggtgctcagggaccttctggtgccact ggattccctggagctgctggccgtgtgggtccccctggtcccaatggtaatcctggacct cctggtcctgccggctctcctggtaaagatggacccaagggtgtgaggggagatggtgga cctccaggcagacagggtgatgctggactccgtggtcctgctggggcccctggagagaag ggagatgctggagaggatggtcctcctggtctctcaggtccttcaggtcctcagggtttg ggtggtcagcgcggtattgtcggtctacctggacagcgtggtgagagaggtttccctggt ctgcccggaccttctggtgagcctggaaagcagggagcttctggtggctctggagaccgt ggaccccctggacctgttggaccacctggacttaccggaccggcaggagagcccggtaga gagggcaacgctggatctgatggccctcctggtagagatggttctgctggtatcaagggt gatcgtggtaacactggtcctgctggtgctcctggtgctccaggtggtactggtgctcct ggtcctgttggtcccactggcaaacagggagacagaggagagtctggcgcacaaggacct gctggatcttcaggacctgctggggccagaggaatgcctggaccccaaggaccccgtggt gacaagggtgagggtggagagtcaggtgagagaggacagaagggacacagaggcttcact ggtctgcaaggtctgcctggacctccgggtcaatctggagaccagggagcaactggacct tctggaccttctggacagagaggacctgctggacctactggacctggtggaaaggatggt gcaaatggtatgccaggacccattggaccccccggacctcgtggtcgcagtggagagtct ggtcccgctggtcctcctggaaaccctggaccccccggtcctcctggtcctgctggccct ggcatcgacatgtctgccttcgctggcctgggtcagactgagaagtccccagatcctgcc aggtacatgagagccgaccaggcttctggaaacctccgtcagcacgatgccgaggtcgac gcaacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatctaag aagaaccctgctcgcacctgcagagacctgaagctctgccaccctgactggaagagtgga gaatactggattgatcccaaccagggctgcactgttgatgcaatcaaggtcttctgcaac atggagacaggtgaatcttgcgtccggtccaagcctgccaacatccctcgtaagaactgg tggtccagcaagagcaaagaccgcaaacacgtctggttcggagaaacaatgaatggagga ttccatttcagctatggtgatgacagcctggcacccaacactgctgccattcagatgacc ttcctgagactgctgtccaccgaggcttctcagaacctcacctaccactgtaagaacagt gtggcctacatggacagtgcaatgggcaacctgaagaaggccgtgctgctgcagggctcc aacgatgtggagatcagagctgagggcaacagccgcttcacttacagcgtgatggaggac ggctgcacgagacacacgggccagtggggaaagacgataatagaatacagatcacagaag acctctcgtctacccattgtggacattgcccctatggatattggtggatcagaccaggag tttggagtcgatgtcggtccggtctgcttcttataa

DBGET integrated database retrieval system