Solea senegalensis (Senegalese sole): 122768227
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Entry
122768227 CDS
T07721
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122768227 (col7a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Interfer-bind
FN3_DSCAM-DSCAML_C
Fn3_ROS1
DUF1194
Motif
Other DBs
NCBI-GeneID:
122768227
NCBI-ProteinID:
XP_043879989
LinkDB
All DBs
Position
LG4:25945618..26016142
Genome browser
AA seq
3063 aa
AA seq
DB search
MWSSVFVVTVLLSSMKPAEAQGRCNNVQAADIVFLIDGSSSIGRANFLQVKGFMAGIVKP
FVSFVGESAIQFAAIQYSEIPRVEFTFSTYLNGTELVNAIQNINYKGGNTRTGAGLKFVA
DNFFNPATSRDVPKITILVTDGKSQDSVQEPAEKLRGQGVHVFAVGIKSADRNELAQISS
EPSSDFTSFVGDFKLLNTLLPLVGPRVCSKAGGVYASDEAFSGPSNIQFTGQTSDSLRFR
WAAAGGPVSGYVIQYVPLSGLGQPITAELKQETVSVKQRTFTARELQAGTDYLVTVIAQY
PNSVGESVSAKQRTRSLPGVSSLYLIQANFFSLTVGWDQPSSPVQGYRLTYGLRGQPADQ
LSVQSLSSESTSVTLESLQPDTEYVVSLYPLFPRNSASPSTLSARTLRLEAVKQLSVETE
SEGSVVLRWRGVSGARAYRLVWGPFTGRNVETVEVDGGREFYTLSSLQPDVEYIITIIPL
YEGDTEGPVATARFKIERQEQQVLRAAITSPSSIRLTWRIIQSSQGYRLEWREGEGGRVQ
SLSFPRGTTAYELTGLRPQTEYIITMYTLFEGREEATPVSTTVREEQPVGRVSNLRVVEA
LGSTARLGWTGVAGATRYRIVILNTEAGTEEIQTVNGSQTTLDLRDLTPGVSYGVSVTAL
VGENEGDPVTVYIKPEQNIGRVTNLRVTNANSRRLRIAWTGVGEASGYRVTWRQGNTGLE
QSRNLGAEASTFTIDGLQPDEALIVGVATVVDERVGEVVSLSARTNPHGGSVPGLRVVDV
TSQRIRVAWSPSPRATGYKVTWRNNGVETTRNVPADVSSYTIDGLQSDLVYTVKVSALSG
SREGSPSTLNIRTESDQSVVGTVTSLQIQESQGEIVRVSWVGVQGATSYRVSWRRTDGGE
ERSQLVGGDVTAVDLERLDPGAQYEVQVMALVQNREGSPVSVRITTPGTDPTAPSLPSTT
LRVAEVTQSSVRLEWFPLLGATGYIVRWREDADPGPGSSYSLPAASSSYLVTGLRLGRRY
RFSVQPTFQSGPGPESSVDERTVCAGGRLDLVFLVPASTDRLNLARPLRDLVTSAARSFS
AIGPRDTQVGVVVYGYRPKTWFLLSRHDRSDTLLQDIQATPFEESRGNNIGEAVTFARQY
LLTPSAGRRPTVPGAVVIIADRKSADNLTLAASALRATGVTVLAVAVDQADTEELRYTVT
DGSTQNILYARDAAQLDALHSDLADFLCGVASAPVVSPGPQQCTVQCPRGERGERGEKGD
RGRDGTDGRNGGPGLDGLPGRDGPRGPQGPAGPPGPPGQPTPFEPSGRVKGEKGERGFPG
IDGNPGLPGRPGAPGNAGVPGSQGLPGIRGVSGEPGTTGQQGSKGDKGERGEPGSTIAGG
GLPGRKGEPGLPGIPGTPGRPGITGTKGESGVPGLSGQDGRPGIPGTPGLSIKGEKGSSG
ERGPPGVGSGVAVKGEKGSPGIPGSPGTLGPRGPAGPQGSKGDKGDGGEGLPGPAGRQGE
PGDRGPRGPPGEIGSKGDRGQPGEPGSQGDRGERGPAGEVGGKGDAGKPGLSGSPGLRGL
PGPSGPPGEKGRDGAPGEPGGSSPGIPGKRGEQGERGIPGLDGQRGEKGEPGQRGEKGSP
GLGAAGPKGESGERGLAGISGRPGAKGDAGEPGERGDNGRPGIPGKPGLPGKEGGRGEKG
DEGTPGESGLPGKPGERGLRGLAGQPGRPGEKGELGDPGEHGINGSPGPAGLKGDKGSQG
LQGPAGPPGKVADIQGQLKGERGDKGDAGSPGGLGSKGQKGESGTPGAAGLRGPEGQRGP
AGTRGDTGERGTPGEKGERGASGLDGRPGLDGKPGPLGPAGQRGDSGKQGDPGRDGLPGI
RGELGPQGPVGPPGTPGTPGKSGEDGKPGSPGKMGEDGVPGEDGRKGDRGDAGAAGRDGR
DGQKGDRGLPGAVGPSGPSGPPGLPGSIGPPGQVVYLKGAEAAPIPGPQGPPGTPGVPGV
PGAAGPRGERGPHGLKGETGDPGEDGAPGKPGTAVDVQKALASLGIQVSELKVVVDKKDL
LVAPSVQKPEKGAKGDTGDTGQRGPAGLDGARGIPGERGTKGDQGDRGPAGATGPPGRAI
GERGPAGPQGPAGESGKPGIPGVPGRTGEVGESGRPGEKGERGDKGDKGEAGKLGLTGPS
GPPGQKGASADSVLIGAPGARGPPGFAGQKGDAGAAGPPGPKGDRGFVGPKGDKGERGEH
GEKGRDGSEGTPGEPGKPGQDGKAGPPGPSGPQGQSGNQGEPGIRGPTGPLGPSGLPGAP
GLKGNQGEPGVGVQGPPGAQGSTGLPGPLGPPGAVGPQGPPGLSGQVGESGKPGVPGRDG
VPGKEGTHGLPGKQGIAGPPGLPGLKGEQGDSGPPGKAVAGPPGPKGAMGPAGPTLPGTT
GERGLPGEKGGKGDKGGAGIKGERGVVGEAGDPGEDGAQGSPGPKGDKGERGIGLAGPPG
RDGPQGLKGDSGLPGTAGPSGPQGKTGDVGPPGLRGENGQPGPPGPPGERGLQGFAGRPG
NVGPPGPAGPAGQPGSAGTNGVKGDKGEVGVGVPGARGERGDAGTRGEEGRPGLDGERGP
TGSPGARGVRGEKGDGGPQGDKGEKGDTVLVGGPPGEKGNKGETGDRGPKGVQGEKGTKG
QEGPSGEQGQRGEPGEKGSVGFPGARGPGGQKGEAGHPGVPGEAGLSGKDGLLGQKGEKG
FTGVSGLRGVKGDRGPKGNCGSDGPKGEKGDAGTHGRSGLPGRKGEKGGVGPSGASGAPG
KEGLVGPKGDRGFDGVAGSKGSQGEKGERGAPGVPGPPGPRGVDGAAGLTGPQGPSGGPG
PEGLQGEKGERGPFGPSVVGPRGIPGIPGERGQPGELGPDGAKGDRGEPGMTEDEIRHYV
RSEMNQHCACGGSGLDPQSQPTVRARPALEQLGLSGEEGRELHVVVNTNDPDYEHIYSVE
AYDEPMDELLYVEPPANRSDGETVKKDSEKTFTDEANKSATKPKSIRTKRRVRGEADLCQ
LPMDEGNCGRYSLRWYFNDRSQACRPFIYSGCEGNDNRFLHLEDCEESCLGDAKGPRPVK
TAR
NT seq
9192 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcagcgttttcgttgtgactgtgctgctgtcgtccatgaaaccggctgaagct
cagggcaggtgtaataatgtgcaagcagcagacatcgttttcctgattgacggctcctcc
agtattggccgggccaacttcctgcaggtgaagggcttcatggcaggaatcgtcaagccg
tttgtcagcttcgttggcgagtcggcgatacagtttgcggccatacagtacagcgagatt
cccagggttgaattcaccttctctacctacctgaatggcactgagctggtcaacgccata
caaaatatcaactacaaaggtggaaacacgcgcaccggcgctggtctcaagtttgtggct
gataacttcttcaaccctgcgacgagtcgcgatgttccaaagatcaccatccttgtcacg
gacgggaaatcccaggacagtgtgcaggaaccggcagagaagctgcgcggtcaaggagtg
catgtttttgcagttggcataaagagtgcagacaggaatgaactggctcagatctcctcg
gagcccagttcagacttcacctcgttcgttggggacttcaaactactgaacactcttctt
cctcttgtgggcccccgggtgtgctccaaagcaggaggagtgtatgctagtgatgaggcg
ttttccggtccatcgaacattcagtttacagggcagacgtccgattctctcaggtttcgc
tgggctgccgctggagggcctgtgagtggctatgtaatccagtatgtgcccctctctggt
ctggggcagcccataacagcagagttaaaacaggagaccgtctctgtgaagcagaggacg
ttcactgcacgagagctgcaggccggaacagattacctggtgaccgtcatcgcccagtac
cccaacagtgtgggagagtctgtgtctgccaagcagcgaaccaggtcgttgccgggcgtg
tccagtctatacttgatccaggcgaacttcttctccctcactgtgggctgggatcagcct
tcgtctcccgttcaaggctacagactcacctacggactacgaggtcaaccggccgatcag
ttgtcggtgcagtccctgtcctcagagtccacgtccgtcaccttggagtcgcttcagccc
gacaccgagtacgtcgtcagcctctacccactgttcccccgcaactctgcgtccccgtcc
acgctcagcgcccgcacattgcgcctcgaggcggtgaagcagttgtcagtggagacggag
tcagagggcagcgtggttctgcggtggagaggcgtcagcggggctcgtgcctaccgtctg
gtctggggaccgtttacaggtcggaacgttgagaccgtggaggtcgacgggggccgtgag
ttttacactctgtccagtctgcagcccgacgtcgagtacattatcaccatcatcccgctg
tacgagggcgacactgaaggtcctgtcgccactgccaggttcaagatagagcgtcaggag
cagcaggtcctcagagcggccatcaccagcccctcctccatccgcctcacctggagaatc
atccagtcctctcaaggatatcgtctggagtggagggagggagaaggagggcgtgtccag
agcttgtcctttcccagaggcacgaccgcctacgagttaacgggtctccgcccccaaaca
gaatatatcatcaccatgtacaccctgtttgaaggtcgcgaggaggccacgcccgtctcc
accaccgtcagagaggagcagcctgtggggagggtgtccaacctgagggtggtggaggct
ctgggcagcaccgccagacttggctggacaggcgtcgccggagccacgaggtaccgcatc
gttatcctcaacacagaagctggaacagaggaaatccagaccgtcaacgggagccaaacc
acgctggatctcagagacctgacgccgggagtgtcctacggtgtcagtgtcactgctctg
gtgggagaaaatgaaggagacccagttactgtctacatcaaaccagagcaaaacatcggc
cgagtcacaaacctcagagttactaatgcaaacagccggagacttcgaatcgcctggacc
ggtgtcggtgaagcatcagggtacagggtcacatggaggcaaggcaacacaggactggag
cagtcccgtaacctcggcgcggaggcgtcgaccttcaccatagacggcctgcagccggac
gaggcgctgatcgtcggcgtggcaacggttgtggacgaacgcgtcggagaagtcgtgagt
ctgtcggctcggactaatccccacggcggatcggtgcctggactccgcgtcgtcgacgtc
acgtctcagaggatacgcgtggcgtggtcgccgtcccccagagccacgggctacaaggtc
acatggcgcaataatggagttgaaaccactcgtaatgtgccggctgacgtctcctcctac
accattgatggtctacagtcagatttagtctacactgtgaaggtttcagcactgagtggc
tctcgagagggaagcccctccaccctcaatatcagaacagaatcagatcagtccgtggtc
gggactgtgacgtcactgcagatccaggagtcccagggagagatcgtccgagtgtcgtgg
gtcggcgtgcagggagccacgtcttaccgcgtgtcctggaggaggacggatggaggtgaa
gagaggagtcagctggtcggaggagacgtgacagcggtggatttagagcgtctggaccct
ggagctcagtatgaggtgcaggtcatggctttagttcaaaacagagagggttctcccgtg
tctgtcagaatcaccacacctggtaccgatcccaccgctccctcgctgcccagcaccact
ctacgagtggcagaagttacccagagttctgtgcggctggagtggtttccactgctcggt
gccacggggtatattgtgcggtggagagaggacgcagaccctggtccaggctcgtcttac
tcactgcctgctgcgtccagctcctacctggtgactgggctgcgtctgggccgtcgttat
cgcttcagcgtgcagccgacctttcagagcggaccgggaccggagagctctgtggacgaa
cgcactgtgtgtgcgggcggccgtctggacctggtgtttctggtgcccgcgtccaccgat
cgactcaatctggcgagacctctgcgcgacctggtcacgagtgcggcgaggtcgttcagc
gccatcggcccccgcgacacacaggtgggagtggtagtttatggttacagacccaaaaca
tggttcctgctcagccgccacgaccgctcagacacgctgctgcaggacatccaggccacg
ccctttgaagaaagccgagggaataatattggtgaggcggtgaccttcgcccgacagtac
ctcctgaccccctcagctggacgcagaccgaccgtccccggtgccgtcgtcatcattgct
gacaggaagtcagcggacaacctcaccctcgcggccagcgctctcagagcgacaggtgtc
acagtgttagcggtggctgtggaccaggcggacactgaggagctgcgttacaccgtgaca
gacggcagcacccagaacatcctgtatgcacgtgatgcagcgcagctggacgcgctccac
agtgacctggcagatttcctctgcggcgttgccagcgctccagtggtgtctccaggtcca
cagcagtgcacggtccaatgcccacgcggtgagagaggcgagcgtggagagaagggcgac
agaggcagagatgggacagacggacgcaacggtggacctggtcttgatggtttgcccggg
agggacggccccagaggccctcagggaccagcaggaccaccgggaccgccgggccagccc
accccgtttgaaccctcagggcgggtgaaaggagaaaagggagaacgagggtttcccggt
attgatggaaatccagggttgccaggtagacccggtgcccccggaaacgcaggagttccc
ggttcacagggcctgccgggcatcagaggagtctctggtgaaccaggtacgaccgggcaa
caagggtcaaagggcgacaaaggtgaaaggggtgaaccaggctcaactatagctggaggg
ggtcttccagggaggaagggagaaccaggcctcccagggataccgggcactccgggtcgg
ccgggcatcaccggaaccaaaggggaatctggagttccgggattatcaggtcaggacggt
cgtcctgggattccaggaacaccgggactctccatcaagggagagaagggcagctcagga
gagaggggacctccaggtgtaggcagcggtgtggcagtgaagggcgagaagggctctcca
ggtattccaggatctccaggcactctgggccctcgagggccagcaggaccacagggcagc
aaaggagacaagggtgacggtggtgaagggttacctggacctgcaggcagacagggagag
cctggagacagggggcctcgtggtcctccaggagagattggcagtaagggtgaccgagga
cagcctggagagcctggatcacagggagacaggggagagcgaggaccggctggagaagtc
ggggggaaaggcgacgcaggaaagccaggcctctcaggatcaccggggctgagaggttta
ccaggacccagtggaccaccgggagaaaagggacgtgacggagctccaggagagcctgga
ggaagttctccaggtattccaggaaagagaggtgaacagggcgagcgaggtattcctggt
cttgatgggcagcgaggagagaaaggagagccaggacagagaggagagaaagggtcacca
gggttaggtgctgctggtcctaaaggagaatcaggagagagaggcctggctggtatcagt
ggaagaccaggtgccaagggagacgctggtgaaccaggagagcgaggggacaacgggcgt
ccaggaatcccaggaaagcctggtcttcctgggaaagagggaggcagaggagagaagggc
gatgaaggcactcctggggagtctggacttccagggaagccaggagaaagaggactcagg
ggactggctggtcagcctggacgtccaggagagaaaggagagctgggagaccccggagag
catggaataaatggcagccctggacctgcaggactgaaaggggataaaggcagccaggga
cttcaaggacctgctggaccaccaggaaaagtggctgacatccaggggcagctgaaagga
gagaggggagacaaaggtgacgccggcagcccgggaggactcggcagcaaaggtcagaaa
ggagaatcggggactcctggagccgccggcctacgaggtcctgagggacaacgggggcct
gcaggcacaaggggtgacacaggagaaagaggaacaccgggagagaagggagaaagggga
gcttctgggctggatggacgtccaggtctggatggtaaaccaggtcctcttggacccgct
ggacagaggggggattctgggaaacagggagatcccgggagagatggtttaccaggaatt
agaggagaactgggccctcaagggcctgttgggcccccaggaactccagggacacctggt
aaatcaggtgaagatggcaaacctgggtctcctggaaaaatgggtgaggacggcgtgcca
ggagaagacgggaggaagggcgacagaggagacgcaggagcagctggacgagatggccgt
gatgggcagaaaggagaccgagggcttcctggagctgtaggcccctccggtccttcaggg
ccacctgggttacctggcagtattggtcctcctggacaggttgtgtacttgaaaggagcc
gaggcggcaccgatccccggcccacaggggcccccaggaacccctggcgtccccggtgtc
cccggagctgcaggacccagaggagagcgaggtccccacggcctcaaaggtgaaactggg
gacccgggagaggacggagcaccgggcaaacctgggacagctgtggacgtacagaaggct
ctggccagcctcggtattcaggtctctgagctgaaggtggttgtggacaagaaggacttg
cttgtggctccttccgtgcagaagccggagaaaggtgcaaagggagacacgggggacaca
ggacagagaggacccgctgggttggatggcgctcgtggtattccaggagagagaggaaca
aagggggatcaaggggatcgaggacctgcaggagcgacagggcctcctggaagagccatt
ggggaaagagggccagcggggccccagggccctgccggagagtctggcaagcctggtata
ccaggtgttccagggcgaactggggaagtaggagagtctggaagaccaggagaaaagggg
gagagaggtgacaaaggtgacaaaggagaagctggaaaacttggattaacggggccatcg
ggtccaccgggtcaaaagggagcgtctgctgattcagtgctgattggtgcacctggggct
cgaggcccgccaggatttgcaggacagaaaggagacgccggggcagctggaccaccagga
cccaaaggagacagaggttttgtgggaccaaaaggtgataaaggagaaagaggagaacat
ggagaaaaaggacgcgatggctcagagggaacaccaggagaaccagggaaacctggtcag
gatggaaaagcgggcccaccggggccctctggtcctcaagggcaatcaggaaatcaagga
gagcctggcatacgggggccaactggcccgttgggtccctctgggcttccaggtgcacca
gggttaaagggtaatcaaggagaaccaggtgttggcgtgcagggtcctcctggtgcccag
gggagcacaggtttgccaggaccactgggccctccgggagctgtcggtccacagggccct
ccgggactgtcaggccaggtgggtgagtccggtaaacctggagttcctggaagagatggc
gttcctgggaaagaaggaacacatggactaccaggaaagcagggcattgctggacctcca
ggcctgcccggcttaaagggggagcagggagacagcggccctcccgggaaggcagttgcc
ggtcctcctggacccaaaggagcaatgggtcctgctggtccaacactacctggcacaact
ggagagagaggtctacctggcgagaagggaggcaaaggagacaaaggtggtgctggcatc
aaaggggaaagaggagtggttggtgaagcaggagacccgggagaggatggagcacaggga
tctcctgggccaaaaggagataagggggagaggggcataggactggctggtcctcctggt
cgggacggtcctcaaggtttaaaaggagactcaggtcttcctggtacagctggtccttca
ggaccacagggaaagactggtgatgtggggcctcctggcctgagaggagaaaatggacaa
ccaggacctccaggaccacctggggagaggggtcttcagggctttgcgggtcgtccagga
aatgttggacctcctggtcctgctggacccgctggacaaccaggctccgctggtaccaac
ggggtcaaaggagacaagggggaagttggcgttggtgtccctggtgctcgaggagagaga
ggagatgcagggaccagaggcgaggagggtcgtcccggtctggacggggaaagaggacca
actggttccccgggggctcgcggtgttcggggagagaagggagacggtggacctcaaggt
gacaaaggagaaaagggtgacactgtgctcgtgggagggcctcctggagaaaagggcaac
aaaggagaaacgggcgacagagggcctaaaggggtccaaggagaaaaaggaacaaagggt
caggaggggccttcaggggagcagggtcagaggggagagccgggggagaaaggatccgtc
ggattccccggggcccgcggtcctggtggacagaagggagaagccggtcaccccggagtg
cctggtgaagcgggtttgtcagggaaggacggactgctggggcagaagggcgagaaggga
ttcaccggtgtttcaggactgagaggagtcaagggtgaccgaggacccaaggggaattgt
ggcagcgatggacccaaaggagagaagggagacgctggtactcacggtcgatccggcctt
ccaggaagaaaaggtgaaaagggcggtgtcggaccgtctggagcgtctggggctccggga
aaagaaggactcgtgggccccaagggtgatcgtggtttcgatggggtggcaggatccaag
ggatctcagggagaaaagggtgaaaggggtgctcctggtgtgcctggccctcctggtccc
agaggagtggatggggccgccggtctaactgggccccagggaccatctggtggtcccggc
cctgaagggctccagggagagaagggagagcgagggccgttcggtccgtccgtggtgggt
ccacgcggaatcccgggtatcccaggagagcgaggacagccgggagagttgggcccagat
ggagccaagggagacagaggagagccgggcatgacggaggatgagatcagacactatgtt
cgctcggagatgaatcagcactgtgcgtgtggaggttcaggcctggaccctcagtcccag
cctacggtcagggctcggcctgcactcgagcaactgggcctgagcggtgaggagggccgc
gagctgcacgtggtggtgaacaccaacgaccccgactacgagcacatttactccgtcgag
gcctacgacgagcccatggacgagctgctctacgtcgagccgccggccaaccgcagcgat
ggtgagactgtcaaaaaggactcagagaaaacattcacagatgaagcaaacaaatcagcc
acaaagcccaaatcaatcaggaccaagaggagagtcagaggtgaagcagacttgtgccag
ttgcccatggacgagggcaactgtggacgatacagtctgcgctggtattttaacgatcgg
tctcaggcctgcagacccttcatctacagcggctgtgaaggaaacgacaaccgcttcctc
cacctggaggactgtgaagaatcctgccttggggatgctaaaggtcctcggcccgtgaag
acggcgcgatga
DBGET
integrated database retrieval system
