Solea senegalensis (Senegalese sole): 122768372
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Entry
122768372 CDS
T07721
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssen04121
]
122768372 (pdzrn3b)
Enzymes [BR:
ssen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122768372 (pdzrn3b)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122768372 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
zf-RING_6
IBR_1
RING_XB3-XBAT31
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
122768372
NCBI-ProteinID:
XP_043880245
LinkDB
All DBs
Position
LG4:11463777..11564708
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AA seq
1047 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCEYSPAKCRNRGCSEVL
SLRDMDAHVRDTCDYRPVGICESGCGLMLSHKEQKSNGHCCVRALKAHNSALHYKILSLD
RELKTQTIKANKREKSLLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKSVAISCKEG
ETKSTTVVLLREGGSLGFNIVGGRPCVDDNDGTSNEGIFVSKIIESGPADKEGGLQIQDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPLPKLVSPTADTQVSDTSTQTDIT
LQHIMALTKLPPASPPMTELEEYLLTDENPPGHAYFDPNDFLEGIQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEVDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVVLLTSESNQNISLLVARPEMQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENVGDDQTTASNTLG
SCRKLTYSQDTLGSTDLPFSSESFISADYTDTDFLGIPADDCERFRELLELKCQMRSSAA
QGLFYQSGGAGGQDQEVVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHD
SGFHNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
ENEGQAGASSSNSRIPKPLLSPVQEVCGPSRSRGSSKDQDGALQAESKERKSGESSKSGR
SCSHPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPISPGDLEPKM
EWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEERK
QHAVRAKEQRQRREFMKQSRADCLREQSGAEDKKEPNIIELSHKKMMKKRNKKIFDNWMT
IQELLTHGTKSPDGTRVYNSILSVTTV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgatttaaggggaccgtggacccggatttcaaatgcaacctg
tgcaataaagtcctggaggacccactaacgactccgtgtggccacgtcttctgctccggc
tgcgtgttgccgtgggtcgtccagcagagcagctgccccgtcaaatgtcagcggatctcc
accaaagagctgaaccacgtcctgccgctgaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgcggggctgcgatgccgtggtgaagttgcagcatctggccgagcac
gcagagatgtgcgagtactccccggccaagtgccgcaaccgaggatgcagcgaggtgctt
agcctgcgggacatggatgctcatgtgcgggatacgtgcgactacaggccggtggggatc
tgcgagagcggctgcggcttgatgctcagccacaaggagcaaaagtccaatggccactgc
tgcgtgagagcgctgaaggcgcacaacagcgcgctgcactacaagatcctgagcctggac
agagagctgaagacgcagaccattaaagccaacaagagggagaagtcgctgctggcgcag
ctttccgccgtgcacagtgagctgcagatgactgcgctgaaatatcagaagaaattcact
gaatacagcgagaggatcgactctctcaccaaaagtgtggctatctcgtgcaaggaaggt
gagactaaaagcacgacggttgtccttctccgcgagggtggatctctgggttttaacatc
gtaggaggaaggccatgcgtggatgataatgacggcacttcaaatgaaggaatcttcgta
tccaagatcattgagagcggtccagcagacaaagaaggtggccttcaaatccaggacaga
ataatagaggttaatggcaaagacttgtccaaggccacacacgaccaggcagtggaggcc
ttccgcactgccaaggagcccatcatggtccaggtcctgcgccgggctcctctccccaaa
ctggtcagccccaccgctgacacccaggtgtcggacaccagcactcagaccgacatcacc
ctccagcacattatggcactcaccaagctgccccctgcttcgccccccatgacggagctg
gaggagtatctgcttacagatgagaatcctccgggacatgcgtactttgacccaaatgac
ttcctggagggaatacagcaggacatagaacgcgaggagctggaatatgaggaggtggat
ttgtaccgagccaatatccaggacaagctcggcctgaccatctgttataggactgatgat
gaagatgaagctgggatctacatcagtgaggttgatccaaacagcattgctgcaaaggac
ggcaggattagagaaggggacaaaatcatccagatcaacggtgttgagatccagaatagg
gaggatgctgtagtactgctgaccagtgagagcaaccagaatatctccctgctcgtggcc
agaccagagatgcagctggatgaaggttggatggatgacgacaggaacgacttcctggat
gacctccatatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagc
atgcttcagcagaagaagcacgaagaggacggaggcaccaccgacacagccacgctgctg
tccaaccaccacgagaaggatagcggagtcggccgcacggatgagagcacacggaatgac
gagagctcagagcaggagaacgttggtgatgaccagaccacagcctccaacacgctgggt
agctgcagaaagctgacctacagccaggacacgctcggcagcaccgacctgccctttagc
agtgagtcattcatctctgcagactacaccgacacagacttcctgggcatcccggccgac
gactgtgagcgcttcagggaactgctggagctgaagtgccagatgaggagcagcgcagct
cagggtcttttctaccagagcggaggagcgggaggtcaagaccaagaggtcgtggataag
gagctggagctgctcaacgaggagttgcgcaccatcgagcttgagtgcctcaatatcgtt
cgcgctcacaagatgcagcaactgcgggagcagtgccgtgagtcctggatgctccacgac
agcggcttccacaactacaacacgagcatcgatgctcgccgccatgagctctcagacatc
acagagcttccagagaaatcagacaaagacagctccagtgcttataacactggtgagagc
tgccgcagcaccccactgacactggagctgtctccagacaactcgctccgtcgaggagca
gagaacgagggtcaggctggagcatccagctccaacagcaggatccccaagcccctcctg
tctcctgtgcaggaagtctgtggccctagccggagcagaggctcctccaaggatcaagat
ggtgcactacaggcagaaagcaaagagaggaagtcgggagagtccagcaagtctggtcgg
agctgctcccatccacattcaccttataaacacgctcacatccccgctcatgcccagcac
taccagagctacatgcagctgatccagcagaagtcagcagtggagtacgcccagagccag
atgagtctggtcagcatgtgccgggaccccatctccccaggtgacctggaacccaagatg
gagtggaaggtgaagatccgcagcgacggcacgcgctacatcaccaagcgccccgtcaga
gacaagctgctgagggagcgcgccttgcggattcatgaggagcgcagcggcatgaccaca
gacgacgacgccataagcgagctgaagatgggccgctactggagcaaggaggagaggaaa
cagcacgctgtccgtgccaaggagcagagacagcgccgcgagttcatgaagcagagccgg
gccgactgtctgagagagcagagtggtgccgaggataaaaaggagcccaacatcattgaa
ctcagccacaaaaagatgatgaaaaagaggaataagaaaatatttgacaactggatgacg
atccaggaactgctgacccacggtaccaagtcgccagatggcaccagggtttacaactca
atcctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
