Solea senegalensis (Senegalese sole): 122769371
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Entry
122769371 CDS
T07721
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122769371 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122769371 (ttc37)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
122769371 (ttc37)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_11
TPR_14
TPR_16
TPR_8
TPR_17
TPR_12
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
TTC22_N
HemY_N
CABIN1_N
TPR_Slam
TPR_TmcB
YPL108W_C
COG4_N
Motif
Other DBs
NCBI-GeneID:
122769371
NCBI-ProteinID:
XP_043881792
LinkDB
All DBs
Position
LG5:complement(5864492..5881834)
Genome browser
AA seq
1570 aa
AA seq
DB search
MASKEVKSELKSAREAIKNKEFKEALKHCKAVLKLDKTNYNAWVFIGLAASELDQSDQSH
SAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKVELPNIYQKLVDLYASSDRKKCYEVIK
KLSDSYQSDKDCNKLAKVWLQLIQLKEEDAVDKKELLLLWQEMTQLLSDCIKEEEQNNEV
QQHLITAFEKSLLLIDPVPGEKHQKISADYIQYLSKLPQEETKMKEACESMSSLYPKQSY
PLEVLCSHYLKTGVLTEDTVSRFSRLLDLAPNSGLGHLGMGTKALQEGRYKDAINSLSQG
LKKTSCSTAWYSLAEAQVKMHRYTDSAASCSQGLTTCVSGDEELRVKLLKLKLEALVRSG
GEKAADHALETFSQIIDAEKDLSLVAFKGRAHLNKGQVDQALKVSSQLVASKPNLDQALA
LRGLIHIAEGQQQLAEQCFLKAAAESPNCPEYYFLLGQLYWDMGEESRKDRSKAQTHLLK
AAKLDPHLGAAFRYLGHFYREVANDRGRARGCYKKAFDLDNEDAESGSASVDLSMELEDM
DTALATLESVIAKATPGSAKWAWMRRGLYYLKIGEHQQAVADLQAALRADPEDWVCWECL
GDAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLARSLMDDCRDGGAIDLIQQAMQNLFRAVELRPDLSCLWKLLGDACT
AVSTVSPNRAQVLVPALLAGLDPNTQSHMQNQAQTLKIGERCYVHALKLMSEVPGLWYDL
GLNYYYQARLPCPTEDDQNSQSLIQQKAQQCLKKAIMMDCGNHSYWTALGVISTNRGLEN
FALAQHCFIKSIQVEPNNVVAWTNLGALYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAI
SAAHVALSKYTERIQSDPEAFIMLGYLNEHLQLKRQALQAYQRAVELLQSMPSTEELAFA
LGSYGRALCTSGQWEEAVKVYNSTPLQELSDLTGLALAYFRAGLIPESISAYERALAVAP
SEKDKAYILTALALLQHRQGNLDSAKTLLFKCSVLKEPISESLLCLCALGLVHGDVTLSA
AALTELLKQGSASGSVVEQRCLLTCTLLALQGNYSAVQREASRAVHRNPGNPSLWALLSR
VVPRFYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLAVGRHSGEDGQRNALRTLQR
AVLLCPDDPSAWAGLMAACHTENTSCYLSGSAPCRQGLEKILMSVVSEKVHGVEEIERPL
AQTLEGWVLQQAVAGLVLGGQLEQAEALCSQVLNVSPEHPAVILSLRQVQCQRLLVANSG
TVLPDSVLEQLSNAVMMNPTNIGAWHWLAEVYRSQGLLVQAVMSYRQSLQLASQLGLHSC
QVASLLRLALLALGPCMANVPGDEWKDLVVEATTEVLKLDSSAVALLVQALLQYVTKMAA
RETRRLLERLVYVTSPDFPVTVVQVASWYLLRHLHAKNDEELINVLLQHAKKKGDQRLLE
FHSVLASTAS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaagaagtgaaaagtgagctgaaaagtgccagagaggccattaaaaacaaa
gagttcaaagaggctcttaagcattgcaaggcggttttgaaacttgacaaaaccaattat
aatgcgtgggttttcatcgggttggcagccagtgaactggaccaatcagaccagtcacat
tcagcctataagaaggcagtggagctggagcctgagcagctactggcatggcagggctta
gccaatctttatgaaaagacagaccagtgggatttcaaagttgagctccctaacatttat
cagaagcttgttgatctgtatgcaagctcagacagaaagaaatgttacgaggtgatcaaa
aagctgtcggacagttatcagtctgacaaagattgcaataagctggcaaaggtttggctg
cagctcattcagctgaaggaggaagacgctgtggacaagaaggagttgctgctgttatgg
caggaaatgacccagctcctgtcagactgcattaaagaggaagagcagaacaatgaagta
caacagcatttaatcacggcctttgagaagagcttgctcctcatagatcctgtaccagga
gagaaacaccagaagatctcagctgattatattcaatatctttcaaaacttccacaagag
gaaaccaaaatgaaagaggcctgtgagtcaatgtcgtccctttaccctaagcaaagttat
cctcttgaggtcctttgttctcattacctaaaaacaggtgttctgactgaagacacagtc
agccgtttctcccgcctcctggatcttgcccccaactctgggttaggtcacttggggatg
ggcactaaagcacttcaggaaggaagatataaagacgccattaacagcctttcacaaggg
ttgaagaagacgagctgcagcacagcatggtacagtttggctgaagctcaggttaaaatg
cacagatatacagacagtgctgcgtcatgctcccaaggtctgacgacgtgcgtttctgga
gacgaggagctgagggtcaaactgctgaagctgaagcttgaggctttagttagaagtgga
ggagaaaaggctgcagatcatgcattggagaccttttcacagattatagatgctgaaaaa
gacctttccctcgttgcctttaaaggtcgtgcacacctgaataaagggcaagttgatcaa
gcacttaaggtgtcatcacagttagtggcctccaaaccaaacctggaccaggctttagct
cttagaggactaatacatatagctgagggccagcagcagctggcagagcagtgcttttta
aaggcagctgccgagagtccaaactgtccagagtattactttttgctgggacaactctac
tgggacatgggagaggagagccgtaaagaccggagcaaagctcaaacacacttactgaag
gctgcaaagttagatccacacctcggtgctgcgttccgttatctcgggcatttttacagg
gaggtcgctaatgatcgtggtcgtgcccgtggttgttataagaaggcctttgacttggac
aatgaggacgctgagtcgggaagtgcctcggtggacctcagtatggagctggaggacatg
gacactgcgttagcaacacttgagtcagtgatagcgaaagccactccaggatctgccaag
tgggcttggatgagacgaggcctttactacctgaagattggggagcatcaacaggctgtg
gcagatcttcaggcggctctgagagccgatccagaagactgggtgtgttgggagtgtttg
ggcgacgcctacctgaaccgccggagcttcaccgctgctctgaaggcctttggcaaagct
catcaacttcagccgtcctccatctacagtgtttaccaggctgctgcaatcaaacagacc
ctgggcaagttcaaagaggctgttgcagagtatttgcagatcacagcacagcaggattat
gttcctgcgcttaaaggccttggagagtgtcagctgtctctggcaagaagtttaatggac
gactgtagagatggaggagccattgatctcattcagcaagcgatgcagaacctcttcaga
gctgtggagctgcgtccagacctttcctgtttgtggaagctgctgggagatgcttgcact
gcagtcagcactgtttcaccaaacagagctcaagttctagtgcctgccctgctcgctgga
ttagaccccaacacacagagccacatgcagaaccaggcccagactctcaaaattggcgag
aggtgctacgtccatgccctgaagctgatgtctgaggtgcccggcctgtggtacgaccta
ggactgaactactattaccaggcgagactgccatgtcccacagaggatgaccagaactcc
caatccctgatccaacagaaggctcagcagtgtttaaaaaaagccatcatgatggactgt
gggaaccacagttactggactgctctgggagtcatttccacaaacagaggtcttgagaac
tttgctctggctcaacattgcttcatcaagtccatacaagtggagccaaataatgttgtt
gcctggacaaaccttggtgccctctatttgaagaaggacaatatcgagcttgcacatgaa
gccttcaagattgctcagtccttggagccgctgtatgtcaactgctggattggacaggcc
ctgatagccgagagagtgggaagctatgacaccatggatcttttcagacacaccactgaa
ctaagtacacatatggaaggagtgaaaggttatgcctactgggtttgttccaccctgttg
gataagagcaacagagactcagagttgtaccgctacaacatagtccagatgaacgccatc
tctgctgctcacgtggcacttagcaagtacacagagaggattcagtctgaccctgaagcc
ttcatcatgcttggatacctgaatgagcatctgcagctaaagagacaggccttacaggct
taccaaagagcggttgagctgctgcagtccatgccctcaacagaagaactggcctttgct
ctgggcagctatggccgtgctttgtgcacctcaggtcagtgggaagaggcagtgaaggtc
tataattccactccgctgcaggagctcagtgatctgactggactggctctggcctacttc
agggctggactcatcccagaaagcatcagcgcctatgaacgtgccttggctgtggctccc
agtgagaaggataaggcttacatcttaacagctctggccctgttgcagcaccggcagggg
aatctcgattcagccaagactttgctgttcaaatgctcagtgttaaaggagccaatctca
gagtctctgctgtgtttatgtgccctgggtttggtccacggggatgtcacactatctgct
gctgccctgactgagcttctaaagcaaggttcggcatctggaagtgttgtcgagcagcga
tgtttactcacatgcaccctgctggctcttcagggtaactacagtgctgtgcagagagag
gcctccagagctgttcacagaaatcctggaaacccgtctttgtgggccctgctgtctcga
gtggtgcctcggttctaccccaggaaggcaaagggtggagcggtcgctggtcatgttgcc
tgtctctccagtatgacccaaggaaagagggcgctgttgtacagtggagtgaaccagctg
gccgttggaagacactcaggagaggatggtcaaaggaacgcactgaggactctgcagaga
gctgtgctgctctgtcctgacgatccatcagcgtgggcaggattaatggctgcctgtcac
acagaaaacacatcctgctacctttcaggctctgctccctgcagacaaggcctggagaaa
atccttatgtccgtggtttctgagaaagtgcacggtgtagaggagatagagcgacctctc
gcccagactctcgagggatgggttctacaacaggcagtcgctggtcttgtgttgggagga
caactggagcaggctgaagccctctgctcacaggtgctgaatgtttccccagaacaccca
gcggtgatactgtcactgagacaggtacagtgtcagcgcctcctcgtggccaacagtggt
actgtcctcccagactctgtgcttgagcagctcagcaacgcagtgatgatgaaccccacc
aatataggggcgtggcattggcttgctgaagtgtatcgtagccagggtctgctggtccag
gcagtgatgtcttacagacagagtctgcagcttgcctcacagctcggcctgcacagttgc
caggtcgccagtctgctcagattagcgctgctcgctctgggaccctgtatggccaatgtc
ccaggagatgaatggaaggacctggtagtagaagccaccactgaggttttgaagctggac
tcatcagctgtggctttgctcgtccaggctctgctccagtacgtgaccaagatggcagca
agggaaacaagacgtttgttggagaggctggtgtacgtgacgtctccagacttcccagtg
acagtggttcaggtggccagctggtaccttctcagacacctgcatgccaaaaatgacgag
gagctgattaatgtccttttgcaacacgccaaaaagaagggagatcaaagactgctggag
tttcattcagtccttgcttccactgcatcctga
DBGET
integrated database retrieval system
