Solea senegalensis (Senegalese sole): 122769760
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Entry
122769760 CDS
T07721
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03082
ATP-dependent chromatin remodeling
ssen03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122769760 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122769760 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssen01009
]
122769760 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122769760 (smarcb1a)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122769760 (smarcb1a)
Protein phosphatases and associated proteins [BR:
ssen01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122769760 (smarcb1a)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122769760 (smarcb1a)
SWI/SNF complex
122769760 (smarcb1a)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122769760 (smarcb1a)
PBAF complex
122769760 (smarcb1a)
SWI/SNF complex
122769760 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
122769760
NCBI-ProteinID:
XP_043882511
LinkDB
All DBs
Position
LG5:844594..852792
Genome browser
AA seq
374 aa
AA seq
DB search
MMALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKK
IVESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQW
VPTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRL
DMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTD
SILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTI
AYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRN
TRRMRRLANTAPAW
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgctgagtaaaacgtttggacaaaaaccggtgaaattccagttggaggaggac
ggagacttttacatgatcggatcagaggtggggaactacctgcgcatgttcagaggttct
ctgtataaaagatatccgtcattatggaggaaactggcctcagtagaagagcgaaagaaa
atcgtggagtcgtcacacgatcacggctacactcagctcgccaccagtgtgactctgctg
aaggcgtccgaggtcgaggagatccttgaaggaaacgatgagaaatacaaagctgtttcc
atcagcactgaacctccggcctacctcagggaacagaaggcaaagaggaacagtcagtgg
gttcccacgctgcccaacagttctcaccacctggacgcagttccctgctccaccaccatc
aaccgcagccgactgggacgagacaagaagaggacgttcccactgtgctttgacgaccac
gatccagcggtgatccacgagaacgccactcagtccgaagtcctggtcccgatccgtctg
gacatggagatcgaaggacagaagctcagagacgcgttcacctggaacatgaacgagaag
ctcatgacgcccgagatgttcgctgagatcctctgtgacgacctggacctcaacccgctg
accttcgtccccgccatcgcctccgccatcagacagcagatcgagtcttaccccacagac
agtatcctggaggagcagacggaccagagggtcatcatcaagctgaacatccacgtgggg
aacatctcgctggtggaccagtttgagtgggacatgtcagagcgggagaactctccagag
aagtttgccctgaagctctgctccgagctgggcctgggcggagagtttgtcaccaccatc
gcctacagcatccgcggtcagctgagctggcaccagaggacctacgccttcagtgaaaac
cctctgcccaccgtggagatcgccatcagaaacacgggcgacgcggaccagtggtgcccc
ctgctggagacgctgacagacgcggagatggagaagaagatcagagaccaggacagaaac
accaggagaatgaggcgactggcgaacacggctcctgcttggtag
DBGET
integrated database retrieval system
