Solea senegalensis (Senegalese sole): 122770105
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Entry
122770105 CDS
T07721
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03440
Homologous recombination
ssen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122770105 (top3b)
03460 Fanconi anemia pathway
122770105 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssen03032
]
122770105 (top3b)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122770105 (top3b)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122770105 (top3b)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Topoisomerases
122770105 (top3b)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
122770105 (top3b)
FA (Fanconi anemia) pathway
122770105 (top3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
122770105
NCBI-ProteinID:
XP_043883021
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Position
LG5:complement(3245295..3258679)
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AA seq
857 aa
AA seq
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MRTVLMVAEKPSLAQSIAKILSKGTCTSRKGLNGACSVHDYSGSFQGQTVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDK
EGENICFEVLDAVEPVMNKGSVRERTVYRAKFSSITDTDIWNAMNSLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKDSPLTLDWDRVRVFDRDVGQMFVNLAKTSREAKVESVSKKEKAKQRPQA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLKQQTNN
PIWAEEVKALLSAGLNRPRKGSDAGDHPPITPMRAASEAELGSDGWRLYEYITRHFIATV
SQDCKYLQTTIDFSIGLESFSCSGKALISPGFTAVMPWQGIPLEEAMPDCERGDTYTVDE
IKLVEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTIENGRKLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLNLIAQGKANFQQVLQHTLDIFKRKFHYFVDSI
NSMDELMEVSFSPIAASGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGARGKSYPLCPYCYSNPPFRDMKKGMGCNECTHPTCQHSLNS
LGIGQCVECESGVLVLDPTSGPKWRMACNKCNVVVHFFEHAHKVQVAPESCDACDASLVA
VDFNKSRTPLPAGETQHTGCVFCDQIFQDLVELKHATMRYRGGGARRGGGGRGRGRGRRG
NPKKPKDKMAALAAYFV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgttctgatggtggcggagaagccgtctttggctcagtccatcgccaaaatc
ctctcgaaaggaacttgtacgagtcgaaagggacttaacggagcatgttcggtgcacgat
tacagcggcagcttccagggccagactgtccgctttaagatgacgtctgtttgtggacac
gtaatgagtctggatttcattgggaagtacaacaactgggacaaagtggatcctgcagag
ctctttagtaaagctcccacagagaagaaggaggccaaccccaaactcaacatggtcaag
ttccttcaggttgaaggccgaggctgtgattacgtggttttatggctggattgtgataaa
gagggcgagaacatctgttttgaggtactggatgcagttgagccagtgatgaacaaaggg
agtgtcagggaacggacggtttaccgcgccaagttcagctcaatcaccgacacggacatc
tggaacgccatgaacagcctgggagagcccaaccgtaacgaggcactgtcagtggatgct
cggcaggagctggatctgcgtattggctgtgctttcaccaggttccagaccaagtatttt
cagggcaagtacggcaacctggactcctccttgatctcatttggaccctgtcagaccccc
acgctaggcttctgtgtggaacgccatgacaagatccagtcctttaaacctgagacttac
tgggtcatccaggcgaaggtattcaaagggaaggacagcccactgacactggactgggac
agagtgagggtctttgacagggatgtgggtcagatgtttgttaatctggccaagacgtcc
agggaggccaaggtggagtcggtgagtaagaaggaaaaggccaagcaaagacctcaggcc
ttgaacacagtggagatgttgagagtggccagctctgctttaggtatgggtcctcagcac
accatgcagatcgcagagcgtctttacacccagggctacatcagctatccacgtactgag
acgacccactaccccgagaactttgacctgaagggaaccctgaagcagcagaccaacaat
cccatttgggcagaggaggtgaaggctctactttcagccggattaaaccgacccaggaaa
ggaagtgatgcaggagaccatccacccatcactcccatgcgtgcggcctcagaggcggaa
ctgggcagtgatggttggcgactatacgagtacatcacgcgtcatttcatagccactgtc
agtcaggattgcaaatacctgcagaccacgatagacttcagcattggcctggaatccttc
tcatgcagtggcaaggctttgatctcaccaggtttcacagctgtgatgccgtggcagggc
atccccctggaagaagccatgccagactgtgagcgaggagacacttacaccgtagacgag
atcaagctggtggagaagcagaccaaccccccggactacctgaccgaggccgaactcatc
acactcatggagaaacatggcattggtactgacgccagcatcccagtccacatcaacaac
atctgccagaggaactacgtcacgatagagaacggacgcaagttaaagccaacaaacctg
ggcatcgtcctcgtacatggctactacaagacagatgcagagctggttctgccgaccata
cgcagcgcagtcgagaaacaactgaacctcattgcacagggcaaagcgaacttccagcag
gtgctgcagcatacactggatatcttcaagaggaagtttcactactttgtggattccatc
aacagtatggatgagttgatggaagtctccttttctcccatcgctgccagtgggaagccg
ctgtcccgctgtggcaagtgtcaccgcttcatgaagtacatccaggccaagcccagcagg
ctccactgctcccactgtgacgagacctacagtcttccacagaacggagccatcaagctg
tacaaggagctgcgctgtccactggacgagtttgagctcgtactgtggacgtcaggcgcc
cggggcaagagctaccccctgtgcccttactgctacagcaacccgcctttcagggacatg
aaaaaaggtatgggatgtaacgagtgcacacatccgacctgtcagcactctctcaactcc
ttgggcattggacagtgtgtggagtgtgagtctggggttctggtgctggatcccacctct
ggaccaaagtggaggatggcctgtaataaatgcaacgttgtggttcacttctttgaacac
gcacacaaagtacaggtggctcctgagagctgcgacgcctgcgacgcctccctggtcgcg
gtcgacttcaacaagtctcgcactccactgcctgccggcgagacccagcacacgggctgc
gtgttctgcgatcagattttccaggacctggtggagctcaaacatgccaccatgaggtac
cggggcggcggcgcgaggcgaggaggaggagggagaggacgaggacggggacgccgtggc
aatcccaaaaaaccaaaggacaaaatggccgccttggcagcttactttgtatag
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