KEGG   Solea senegalensis (Senegalese sole): 122770443
Entry
122770443         CDS       T07721                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ssen  Solea senegalensis (Senegalese sole)
Pathway
ssen03018  RNA degradation
ssen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122770443 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122770443 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssen03019]
    122770443 (lsm6)
   03041 Spliceosome [BR:ssen03041]
    122770443 (lsm6)
Messenger RNA biogenesis [BR:ssen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122770443 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122770443 (lsm6)
Spliceosome [BR:ssen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122770443 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 122770443
NCBI-ProteinID: XP_043883230
LinkDB
Position
LG6:complement(24252288..24256002)
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKV
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctgagaaaacaaaccccgagtgactttctgaagcagatcattgggagacctgtg
gtcgtcaaactgaactctggtgtggattacagaggtgtgctggcgtgcctggatggttat
atgaacattgccatcgagcagacagaggagtatgttaatgggcagctcaagaacaagtat
ggagatgcttttctcagaggaaacaatgttctctacatcagcacccagaagaggaaagtg
tag

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