Solea senegalensis (Senegalese sole): 122770534
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Entry
122770534 CDS
T07721
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03013
Nucleocytoplasmic transport
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122770534
03015 mRNA surveillance pathway
122770534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122770534
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122770534
5.6.2.5 RNA 5'-3' helicase
122770534
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122770534
mRNA cycle factors
Common to processing body (P body) and stress granule
122770534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
SRP54
AAA_16
UvrD-helicase
UvrD_C_2
AAA_22
Hydin_ADK
Motif
Other DBs
NCBI-GeneID:
122770534
NCBI-ProteinID:
XP_043883380
LinkDB
All DBs
Position
LG1:9508289..9522342
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AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGLLQNGDDPVIKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETLLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFSLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLAKQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTGPGPMSSMNI
PIPFNLVMPPIPPSGYMGQMNGPTGGRGGGMKGKAGGGGGGGSRGGRQRNRSNIGGGNGG
MDRGHGGHMSVSQASQDLGSQSFSQGPLTQGYMNMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagactctgacgttcctggacaccgaggaa
gccgacctgcttggagcggatacccagggttccgagtacgatttcaccgacttcactctg
ccaagccagacccaaacccaaggccagacccaaagccagctcgacagtcaggttaatggt
ccagacggattgctgcagaatggagatgaccctgtaataaaagccagtcaactgctggca
gagctgaactttgaggaggatgaagaggacacctactacaccaaggaccttcctgtacat
gcatgcagttattgtgggattcatgatccagcctgtgtggtttactgcaataccagcaag
aagtggttttgtaatggccgtggaaacacatctggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtaacgctgcataaagatggccctctgggggaaacactgttg
gagtgttacaactgtggctgtcgcaatgtcttcctgctgggcttcattcctgctaaagct
gattctgtagtggtgttactgtgcaggcagccatgtgccagtcagagcagtctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtcaagatcccctcagagcaggagcagcttcgtgcccgccagatcactgcccagcag
atcaacaagctggaggaactctggaaggataatcccactgcgaccttggaggatctagag
aagcctggtgtggatgaggagccccagcacgtcctgctccgttatgaagatgcttatcag
taccaaaacatctttggtcctctggtgaagttagaagctgactacgacaagaaactcaaa
gagtctcagacccaagacaacattacagtcagatgggatttgggactgaataagaagagg
attgcatatttcagtctgccgaagacagactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggaattggacatgtcatc
aaagtccctgacaactatggtgatgagattgccatagagttgaggagcagtgccggtgca
ccagtggagattccacacaactttcaggtcgactttgtgtggaaatctacttcctttgac
agaatgcagagtgccctgaagacatttgctgtggatgagacctcagtgtcaggttacatc
tatcacaaacttttaggacatgaggtagaagatgtggtcatcaagtgtcagctgcctaaa
cgcttcactgcgcaaggcttgcctgatctgaaccactcccaggtgtatgctgtgaagaca
gtgctgcagcgccccctcagtctgatccagggacctcctggcacagggaagactgtaacc
tctgctaccattgtctaccacctagcaaaacagggtaacgggccggtgctggtgtgcgct
cccagtaacattgctgtcgaccagctcacagagaagatccaccagacgggactcaaggtg
gtgaggctgtgtgccaagagcagagaagccattgactcacctgtgtccttcctggctttg
cacaaccagacccgtaacatggagagtatgccagagcttcagaagctccagcagctgaag
gatgagactggcgagctgtcgtcctctgacgagaagcgctaccgagctctgcgacgcact
gctgagagggagctgcttatgaatgctgatgtgatctgttgcacctgtgtcggggcgggg
gatcctcgtctggccaagatgcagttccgttcaatcctgatcgacgagagcacacaagcc
actgaaccagagtgcatggtgcctgtcgtcctgggggcaaagcagttgattttggtgggt
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctggggatccggcccattcgtctgcaggtccag
tatcgtatgcacccagcactcagcgccttcccttccaacatattctatgaaggttcgctg
caaaatggagtcactgctgctgatcgtatgaagaaaggcttcgacttccagtggccacag
ccggacaagccgatgttcttttacgtcacacaaggccaagaggaaattgccagctctgga
acatcctatctcaacaggacagaggcagcaaatgtggagaaaataaccacgcggctgctg
aaggctggagctaaacctgatcaaatcggcatcattaccccctacgagggtcagaggtca
tacctggtccaatacatgcagttcagtggctccctccacaccaaactctaccaggaagtg
gagatagccagtgtggatgcctttcaaggcagagagaaagacttcatcatcctgtcctgt
gtaagagccaatgagcaccagggcattggcttccttaatgatccccgacgtctaaatgtg
gcactcaccagggccaggtatggtgtgattatcgtgggaaaccctaaggccttgtccaag
cagccgctgtggaaccacctgctcaactactacaaggagcaaaaggttctggtcgaaggc
cctctcaacaatctgagggagagcctcatgcaattcagcaagcctcgcaagttggtcaac
accatcaaccctgggggtcgtttcatgagcactgcgatgtatgatgccagggaggctctc
attcctgggtctgtctatgaccgcagcagtaatgggcgtatgtctaacatgtacttccag
acccatgaccagatcggtatgattggcacaggcccaggtcctatgagctccatgaacatt
cccatccccttcaaccttgtgatgcctcctatacctccctctggctacatgggacagatg
aacgggcccacaggaggtcgcggtggaggtatgaagggcaaggcaggcgggggaggtgga
ggtgggtccagaggtggccgccaaagaaaccgcagcaacataggtggagggaatggagga
atggaccgtggacacggaggacatatgagcgtcagccaggccagccaggacctgggctcc
cagtccttctcccagggacctttgacacaaggttacatgaacatgagccaaccatcacag
atgagtcagcctgggctctcccagcctgaactctcccaggacagttacctaggagatgag
ttcaagtcccagattgatgtggctctgtcccaggactccacctaccagggggagcgggcc
taccagcacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
