Solea senegalensis (Senegalese sole): 122771033
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Entry
122771033 CDS
T07721
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122771033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122771033
03009 Ribosome biogenesis [BR:
ssen03009
]
122771033
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122771033
Spliceosome [BR:
ssen03041
]
Complex A
U1 snRNP components
U1 related factors
122771033
Complex B
122771033
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-60S particles
Helicases
122771033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
122771033
NCBI-ProteinID:
XP_043884256
LinkDB
All DBs
Position
LG6:complement(12506240..12514327)
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AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGSRGGPPAGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHPDVTHRPIQEVEQYRRSKEVTVKGRDCPKPMVKFHEAAFPSYVMDVIGKQNWT
EPTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGNGPKPAFGGSKAQNG
GSYGGNSGNSGGSYGNSNYSNSNGQGNFGAPANQVGAFGNQSFQGPPQFGAMQRAAQNGM
NHPPFAFNSQQPPPQAQQPPPPPPMGPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagggatcgtggcagagatagagggtatggtggaggaccccct
cgttttggtggtggtggtggtggaggcagcaggggtggacctcctgcaggaaagtttggc
aaccctggtgagagactgcgaaagaagcattggaaccttgatgaacttccaaagtttcag
aagaatttctaccaggaacacccagatgtcacccacagaccaattcaagaagttgagcag
taccgcagaagcaaagaagttacagtcaaaggcagagattgccccaaaccaatggttaaa
ttccatgaagcggcatttccaagctatgtcatggatgtaattggaaaacaaaactggact
gaaccaactccgattcagtctcaggggtggccagttgccctcagtggcaaagatatggtt
ggcattgctcaaactgggtctgggaaaactcttgcataccttctgcctgcaattgtacac
atccaacatcagccgttcttggagcatggagatggaccaatttgcttagtgctggcacca
acccgtgagctggctcagcaggtgcagcaagtggcagctgagtatggcagggcctcccgt
cttaagagcacctgcatctatggtggtgcacccaaaggaccacagatcagggaccttgag
aggggtgttgagatttgcattgctactcctggtcgtctcattgacttcctggagtgtggt
aagactaatttgcgtcgttgtacctatctggtgttggatgaagctgaccgcatgctggac
atgggatttgaacctcaaatccgcaagatagttgaacaaatcaggccagaccgccagact
ctgatgtggagcgccacctggcctaaggaagttcggcagctggctgaggacttcctgaag
gactatgtccagatcaacattggagcactgcagctcagtgccaatcacaacatcctgcag
atagttgatgtttgcaatgacatggagaaggaggacaaactgatccgtttgctggaggag
ataatgagtgaaaaggagaacaagaccattattttcgtggagacgaaaaggcgttgtgat
gaactcactaggaggatgagaagagatgggtggccagcaatgggaattcatggagacaag
agccagcaggagagggactgggtccttaatgagttcagatatggcaaagctccaatcctc
attgctacagatgtggcctcccgtggtttagatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctccgaggattatatccaccgcattggacgcactgcccgaagt
caaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgac
ctgatctctgtgctccgcgaggctaaccaggccataaaccccaagctgatccagatggca
gaggacagaggaggtcgcggaagggggggaagaggtggctacaaggatgaccgccgcgat
aggtattctgggggtgggaggagtaactttggtggtagtagctacagggatagggacagt
gatagggggttcggcaatgggccaaaacctgcctttggtggcagtaaggcccaaaatggt
ggcagctatggaggcaacagtggtaactctggtggcagctatggcaatagcaattatagc
aacagcaacggacagggtaatttcggtgctccagcaaatcaggtgggtgcctttggtaac
caaagctttcagggcccccctcagttcggggccatgcagagggccgctcagaatggcatg
aaccacccgccgttcgcgttcaactctcagcaaccaccaccacaggctcaacagcctcca
ccccctccaccaatggggccctaccccatgccaccacctttcccacagtag
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